[galaxy-dev] Intermittent workflow errors with local galaxy running postgresql 9.3

2013-10-05 Thread Christensen, Todd
Hi All, We have been having issues with workflows generating intermittent errors using sqlite. We recently converted to postgresql 9.3 in an attempt to resolve the issue as suggested in prior posts. Despite switching to postgresql we continue to have these errors. Does anyone have any addition

Re: [galaxy-dev] Intermittent workflow errors with local galaxy running postgresql 9.3

2013-10-05 Thread Björn Grüning
Hi Todd, just to be sure, you are running know postgresql as Galaxy database, or? These locking error is only known from sqlite as far as I know. Can you double check to database backend. Thanks, Bjoern > Hi All, > We have been having issues with workflows generating intermittent > errors using

Re: [galaxy-dev] Visualizations broken after Aug. 12 update

2013-10-05 Thread Jeremy Goecks
You'll need to do two things: (1) Install wigToBigWig and bedtools; see steps 2 and 3 here: http://wiki.galaxyproject.org/Visualization%20Setup (2) Update your datatypes_conf.xml file: If you haven't made changes to your datatypes_conf.xml file, you can just copy datatypes_conf.xml.sample to d