Hi Liisa,
For us, it was only copying the directory
“galaxy-dist/static/scripts/packed/viz” from a fresh install to the
installation we wanted to update.
I hope that helps!
Cheers,
Sajoscha
On Apr 10, 2014, at 5:57 PM, Liisa Koski wrote:
> Hello,
> I just updated to Feb.10 and also no
Not 100% sure but throwing a guess out there I think this name is
being reset by scripts/set_metadata.py at the very end of the job
using files metadata files produced by metadata infrastructure. Job
runners take commands build up by tools and turn them into full
commands for executing using lib/ga
Hello fellow Galaxy devs.
I stumbled upon this old thread from 2011.
http://dev.list.galaxyproject.org/uploading-a-large-number-of-files-to-a-library-td4139796.html
We still have the issue here. When we try to upload a large number of
files to a library, it duplicates each files 5 times.
Does
Hi all,
I'm currently trying to manually install Dan's example Data Manager
for the NCBI BLAST databases - but without using the Tool Shed:
http://testtoolshed.g2.bx.psu.edu/view/blankenberg/data_manager_example_blastdb_ncbi_update_blastdb
To be precise, I'm currently using a slightly modified ve
Hi Peter,
Looks like you are missing the -data_managers flag, try this:
run_functional_tests.sh -data_managers -id data_manager_blast_db
Let us know if you encounter more issues.
Thanks,
Dan
On Apr 11, 2014, at 12:15 PM, Peter Cock wrote:
> Hi all,
>
> I'm currently trying to manually ins
On Fri, Apr 11, 2014 at 5:29 PM, Daniel Blankenberg wrote:
> Hi Peter,
>
> Looks like you are missing the -data_managers flag, try this:
>
> run_functional_tests.sh -data_managers -id data_manager_blast_db
>
> Let us know if you encounter more issues.
>
> Thanks,
>
> Dan
Thank you! That was my si
Sorry about miss-named message. I found a solution which makes me realize this
might have been a bit of a python newbie 'duh' issue.
For those who might need something similar, solution is to add a .pth file to
site-packages folder of python version that galaxy is running under, e.g.
/usr/l
Dear there,
May I ask a question which might be really simple?
How to delete a dataset from a history in local Galaxy? When I clicked on
delete (x), the size on disk is still the same as before deleting it.
[cid:d28891d2-9d20-4688-8e3e-3bf75caa662e]
Thank you so much!
Best,
Xiaofei
<>_
Hi Xiaofei,
The (x) simply flags a dataset for deletion, it does not remove it from
disk. This happens when the instance maintainers run cleanup scripts. If
your instance is so configured, you can use the "Purge Deleted Datasets"
option to immediately remove datasets from disk.
-Dannon
On Fri
Hi Dannon,
Could you tell me how to edit the configure file?
What I see from here
https://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories%20and%20Datasets
is how to use the command line, correct?
Thanks a lot!
Best,
Xiaofei
From: Dannon Bake
Hey, sure. The option you're looking for is "allow_user_dataset_purge",
around line 650 or so.
Good luck!
-Dannon
On Fri, Apr 11, 2014 at 5:53 PM, Wang, Xiaofei wrote:
> Hi Dannon,
>
> Could you tell me how to edit the configure file?
>
> What I see from here
> https://wiki.galaxyproject.
I replied too soon. To answer your second question, yes, that's how to use
the cleanup scripts from the command line. Enabling the option from my
previous email will allow users to *immediately* purge datasets without
waiting on those cleanup scripts.
-Dannon
On Fri, Apr 11, 2014 at 5:55 PM, D
Yes, it works. But, I am still a little bit confuse about the size on the top
right corner. Why does not it change after purging datasets?
From: Dannon Baker [dannon.ba...@gmail.com]
Sent: Friday, April 11, 2014 4:57 PM
To: Wang, Xiaofei
Cc: galaxy-dev@lists.bx.psu
I am sorry to bother again about this problem.
I would like to use Drosophila melanogaster : BDGP5.74. I did the two steps you
suggested to me to install the annotation. I also did from command line. But,
there is no the option of BDGP5.74 from the "Genome" drop-down menu in SnpEff.
The version
Hi!
What do we want :
Using the API (bioblend 0.4.3, Galaxy-dist ( 22 jan 2014 ) ): upload files
from user's FTP directory to Galaxy and launch workflow
How we do it :
1. Determine the user's *libraryID* and *historyID*
2. Upload files : *gi.libraries.upload_file_from_server (libraryID,
server_dir
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