Re: [galaxy-dev] Galaxy Not Displacing History

2014-11-07 Thread Jeremy Liu
Hi Dannon, Clearing the browser cache worked! Thanks so much. Jeremy Liu On Thu, Nov 6, 2014 at 2:04 AM, ofer fridman wrote: > I Had the same problem, after moving to stable everything is working. > I know it's not a solution but for the meantime this is what I have. > > Best, Ofer > > On Wed N

[galaxy-dev] data_columns

2014-11-07 Thread Jorrit Boekel
Dear list, I tried to make a tool that takes tsv input and have some data_columns selection parameters in the xml definition. It seems to work, but I get ‘invalid option was selected’ in the browser interface for each of the data_columns. No logging errors or stacktraces. Digging a bit, I fou

Re: [galaxy-dev] data_columns

2014-11-07 Thread Daniel Blankenberg
Hi Jorrit, Are you subclassing your tsv datatypes from tabular? If you can post your tool xml and datatype_conf.xml additions then we should be to provide more assistance. Thanks for using Galaxy, Dan On Nov 7, 2014, at 12:27 PM, Jorrit Boekel wrote: > Dear list, > > I tried to make a to

Re: [galaxy-dev] data_columns

2014-11-07 Thread Jorrit Boekel
No, I am not subclassing from Tabular. But when I do, it suddenly works. Thanks loads Dan! cheers, — Jorrit Boekel Proteomics systems developer BILS / Lehtiö lab Scilifelab Stockholm, Sweden On 07 Nov 2014, at 19:07, Daniel Blankenberg wrote: > Hi Jorrit, > > Are you subclassing your tsv d

[galaxy-dev] Error in creating admin user during tool shed bootstrap

2014-11-07 Thread Bruno Grande
I'm setting up a local development Tool Shed according to Greg Von Kuster's blog post . During the bootstrapping process, it seems that the creation of the admin user based on the information in user_info.xml fails because of a SQLAlch