[galaxy-dev] The qiuck way to upload large file

Hi all,   I'm a new guy of galaxy and bioinformatics. I read the document of galaxy, but it's so hard to find what I need. I already set up a locale instance of galaxy, it works fine. The problem is I need to analysis large data, but the "upload file" is so slow, is there some ways I can upload l

[galaxy-dev] Galaxy admin users

Hi all,   I install a local instance on a linux system. And I tried to use the admin features of Galaxy, so I add my Galaxy login ( email ) to the list in the following config setting in the Galaxy configuration file universe_wsgi.ini. # this should be a comma-separated list of valid Galaxy users

[galaxy-dev] Speed up the galaxy

Hi all,   How can I speed up the galaxy? Like how to use more cores and memeries.___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the int

[galaxy-dev] 回复： Speed up the galaxy

oraor 收件人： 泽 蔡 抄送： "galaxy-...@bx.psu.edu" 发送日期： 2012年12月4日, 星期二, 下午 9:38 主题: Re: [galaxy-dev] Speed up the galaxy On Dec 4, 2012, at 4:36 AM, 泽 蔡 wrote: > Hi all, >  > How can I speed up the galaxy? Like how to use more cores and memeries. Hi, This is a pretty bro

[galaxy-dev] 回复： 回复： Speed up the galaxy

AGAAGTACATCGCGATGCCGTTNCCNNCGAAGGCGATAGNNNACAAGNCCAAATGNTTCTNCATCNNNCNCGAGNNGNCGAGGNCGCCGTGCGACCCTGC +HWUSI-EAS1734_0003_FC620JEAAXX:8:1:1174:9013#0/1 Ya^a`edddeddc\c`a`dc]\Ba^BBZ]ZZ`ZZZ]a]]BBB^[`\UB_V[V\`ZBSZX^ 发件人： "Bossers, Alex" 收件人： 泽 蔡 抄送： "galaxy-dev@l

[galaxy-dev] 回复： 回复： 回复： Speed up the galaxy

^ 发件人： "Bossers, Alex" 收件人： 泽 蔡 抄送： "galaxy-dev@lists.bx.psu.edu" ; Nate Coraor 发送日期： 2012年12月4日, 星期二, 下午 11:21 主题: RE: [galaxy-dev] 回复： Speed up the galaxy Hi   I presume the best way to optimise your current pr

[galaxy-dev] 回复： 回复： 回复： Speed up the galaxy

ze the files. Any idea to solve this problem? 发件人： "Bossers, Alex" 收件人： 泽 蔡 抄送： "galaxy-dev@lists.bx.psu.edu" 发送日期： 2012年12月5日, 星期三, 4:02 上午 主题: RE: 回复： [galaxy-dev] 回复： Speed up the galaxy It seems old Illumina encoding 1.5 So yes so

[galaxy-dev] 回复： 回复： 回复： 回复： Speed up the galaxy

Hi Brad,   I'm sorry, I can not quite follow you. The "pencil" and the "datatype tab" are tools in galaxy? 发件人： "Langhorst, Brad" 收件人： 泽 蔡 抄送： "galaxy-dev@lists.bx.psu.edu Dev" 发送日期： 2012年12月7日, 星期五, 7:53 下午 主题

[galaxy-dev] Update some tools

Hi all,   I need to deal with fastq encoding 1.8+ data, so I need the FASTX-Toolkit v0.0.13. So how to update the FASTX-Toolkit in the galaxy? By the way, I run a local instance of galaxy.___ Please keep all replies on the list by using "rep

[galaxy-dev] let galaxy use more hardware resouses

Hi all,   I run a local instance of galaxy. Today, I take a look at the system monitor, I found the galaxy just use 4% of a CPU and a little bit of the memory of the PC. But the PC has twelve CPUs and 126G memory. So, how to configure the galaxy to use more hardware resouces to calculate quickly

[galaxy-dev] some problem with the fastq interlacer

Hi all,   I ran the fastq interlacer with a fastq encoding 1.8+ data, the interlacer seems do not reganize the name of the pair-end reads, and treat the pair-end reads as non-pair-edn reads.   Best regards___ Please keep all replies on the l

[galaxy-dev] IOError: [Errno 28] No space left on device

Hi all,   When I added a dataset in the Manage data libraries, galaxy reported some erros. Anyone knows what's wrong?   Miscellaneous information: Traceback (most recent call last): File "/home/caizexi/usr/galaxy/tools/data_source/upload.py", line 384, in __main__() File "/home/caizexi/usr/galax