[galaxy-dev] Few questions about first time out with local install

2012-06-21 Thread Alan V. Cowles
Hey guys, I just recently got several inquiries from users who would like to set up a local galaxy instance here at our university. I setup a server and got it basically running, the only modifications I have made thus far, are opening the website outside of localhost, and having it communicat

Re: [galaxy-dev] Few questions about first time out with local install

2012-06-21 Thread Alan V. Cowles
wrote: On Thu, Jun 21, 2012 at 8:54 AM, Alan V. Cowles wrote: My first question: Is there a way to make the galaxy server retrieve data from a local storage set, instead of uploading newly through the web interface? Http seems like an awfully inefficient way to transmit sequence data. If I

Re: [galaxy-dev] Galaxy at Duke

2012-11-07 Thread Alan V. Cowles
try - use full paths for everything. Also probably keep all on same partition for the best performance, but that would be hard to defend (there was some debate about this recently). Many thanks to Jen for her (as always) careful consideration. Dave C. On Mon, Nov 5, 2012 at 7:15 AM, Alan

Re: [galaxy-dev] Galaxy at Duke

2012-11-07 Thread Alan V. Cowles
ould be hard to defend (there was some debate about this recently). Many thanks to Jen for her (as always) careful consideration. Dave C. On Mon, Nov 5, 2012 at 7:15 AM, Alan V. Cowles <mailto:alan.cow...@duke.edu>> wrote: Hey Dave, Thanks for getting back in touch wi

Re: [galaxy-dev] Galaxy at Duke

2012-11-07 Thread Alan V. Cowles
464%2C1465%2C1466%2C1467%2C1468"; "Mozilla/5.0 (X11; Linux x86_64; rv:16.0) Gecko/20100101 Firefox/16.0" On 11/06/2012 02:20 PM, Alan V. Cowles wrote: I tossed the symlink and mounted the san:/vol/galaxy_sata/data/galaxy to /usr/local/galaxy, though we use symlinks daily for pr

Re: [galaxy-dev] Galaxy at Duke

2012-11-12 Thread Alan V. Cowles
19 11:51 .. drwxrwxr-x 2 galaxy galaxy 4096 Jul 19 12:47 2 should I make 11? or is it supposed to do this automatically for the job? On 11/12/2012 10:54 AM, Nate Coraor wrote: On Nov 6, 2012, at 2:44 PM, Alan V. Cowles wrote: same error without the symlink, this time with actual s

Re: [galaxy-dev] Galaxy at Duke

2012-11-13 Thread Alan V. Cowles
So from what I am reading it is either not creating or prematurely deleting this working directory? I will mod that option and see if I can prevent it from deleting. AC On 11/12/2012 2:11 PM, Nate Coraor wrote: On Nov 12, 2012, at 11:17 AM, Alan V. Cowles wrote: yeah I'm not seein