[galaxy-dev] Attribute Error when uploading data on local

2011-09-21 Thread Colleen Doherty
Hi, I get the following error when trying to upload data to Galaxy AttributeError: 'NoneType' object has no attribute 'lower' Same error for many different types of files (fastq, sam, bam) some of which uploaded last week. What I've tried: Deleting browser cache Deleting cookie Deleting database

Re: [galaxy-dev] Attribute Error when uploading data on local

2011-09-28 Thread Colleen Doherty
Hi Nate, thanks for responding. After reading your e-mail I realized I was making a stupid mistake and not uploading these via http. Sorry for the trouble! Thanks, Colleen . On Wed, Sep 28, 2011 at 7:58 AM, Nate Coraor wrote: > Colleen Doherty wrote: >> Hi, >>  I get the follo

[galaxy-dev] broken-pipe error on NGS Fastq tools "clip"

2011-10-03 Thread Colleen Doherty
I am trying to set up a local instance. When running Clip adapter sequences I get the following error: fastx_clipper: Invalid quality score value (char 'J' ord 74 quality value 41) on line 36 gzip: stdout: Broken pipe I'm stuck on where to try to trouble-shoot this. This is on groomed fastq data

Re: [galaxy-dev] broken-pipe error on NGS Fastq tools "clip"

2011-10-04 Thread Colleen Doherty
That solved it! Thanks for pointing me in the right direction. On Tue, Oct 4, 2011 at 1:19 AM, Peter Cock wrote: > On Tue, Oct 4, 2011 at 1:33 AM, Colleen Doherty wrote: >> I am trying to set up a local instance. >> When running Clip adapter sequences I get the