[galaxy-dev] CuffDiff read group tracking

2013-09-17 Thread Matthew Paul
Hey Galaxy, I am trying to use CuffDIff with replicate analysis on a local instance. I saw that Jeremy Goecks had a solution to this problem: http://user.list.galaxyproject.org/Cuffdiff-changes-tt4655893.html#a4655901. Could I see/use this source code please? I can't really wait until the next upd

[galaxy-dev] Made some additions

2013-09-17 Thread Matthew Paul
Hey guys, I have been working witha local Galaxy for a couple of months now on a cluster. I have created a few tools and would like to know if you would like to include them in the central repository (or how I go about suggesting so). I created a statisticss computer for de novo assembly builds.

[galaxy-dev] Desire to contribute

2013-02-05 Thread Matthew Paul
Dear Galaxy Project community, ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

[galaxy-dev] Fwd: Desire to contribute

2013-02-05 Thread Matthew Paul
(documentation, etc)? We are looking forward to your response. Thank you, Matt Paul -- Forwarded message -- From: Matthew Paul Date: Tue, Feb 5, 2013 at 8:10 PM Subject: Desire to contribute To: galaxy-dev@lists.bx.psu.edu Dear Galaxy Project community

[galaxy-dev] Regarding bug card #572 (Trello) and Galaxy Public Server

2013-02-12 Thread Matthew Paul
Regarding this issue ( https://trello.com/card/filter-and-sort-select-tool-not-dealing-with-special-characters-right/506338ce32ae458f6d15e4b3/572 ): No bug is apparent when using an up-to-date local instance of Galaxy (local history on Trello card). However, when using the Galaxy public server the