Hmm... unfortunately I have no particular guess about either of these issues.
It sounds like you upgraded Galaxy and made large changes to your
configuration at the same time. Can you try just one process and no
load balancer so you can determine if the issue is with the Apache
configuration or the latest version of Galaxy. If that works - can you
just do one web process and one handler and see if the problems
persist? The goal would be to scale up, but still figure out at what
point the problems start.
-John
On Tue, Mar 11, 2014 at 1:30 PM, Alper Kucukural al...@kucukural.com wrote:
Hi All,
I have installed the recent version of galaxy and starting multiple web and
job handlers(six each) on a Centos 5.1 machine.
It is working almost perfectly.
1. The first problem is sometimes jobs never start and they are in grey
stage. After I killed them and start again, they work fine. There are no any
log about why they haven't started. So, if you direct me to find the reason,
it would be great.
2. Second problem is about UCSC visualization issue using the links from
history. I haven't found a solution yet, my XSendFile is all set and working
in the previous version but not this one.
The only difference is I am using the new version and balancer in Apache
since I run multiple instances. So, balancer might not use XSendFile
properly or there is a configuration problem.
http://lists.bx.psu.edu/pipermail/galaxy-user/2012-November/005508.html
https://wiki.galaxyproject.org/Admin/Config/ApacheProxy
Let me know, if anybody has a similar settings and solved this problem with
Apache.
Best,
Alper Kucukural, PhD
Bioinformatics Core,
University of Massachusetts Medical School
368 Plantation St.Room AS4.2067
Worcester, MA 01605-2324
Phone: 774-312-4493
E-mail: al...@kucukural.com
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