Jason,
Thanks for pointing this error out - it's now fixed in galaxy-central
and appears to be working on test.
This fix will be on main after the next scheduled update.
On Sun, May 15, 2011 at 8:43 PM, Ellul Jason jason.el...@petermac.org wrote:
Hi All,
I am installing and testing galaxy-dist locally and I have installed all the
rgenetics tools and have them working but there seems to be a one problem.
If I upload a lped file, then edit the attributes and convert it to a plink
pbed file the tools such as QC reports and Case Control will work.
If however I select (as pbed) RgeneticsData to run the tool directly I
receive the following error:
input data 1 is in error state
I don't think this error is strictly related to rgenetics but something goes
wrong after tools/parameters/basic.py gets called.
Thanks for producing a fantastic resource and I would appreciate any help,
--
Jason Ellul
Bioinformatician
Cancer Research Division
Peter MacCallum Cancer Centre
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