Re: [galaxy-dev] Error message
It shouldn't, unless the root cause of that error also affected the FTP transfer. Does FileZilla say there are any transmission errors? On Thu, Aug 1, 2013 at 1:16 AM, Mark Edward Fabreag merfabr...@gmail.comwrote: Good day! While I was uploading the file (through FileZilla), I encountered this message box: [image: Inline image 1] Will this affect uploading process? Thank you. ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ image.png___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Error message with terminated jobs
Hi, We run Galaxy and Sun Grid Engine cluster environment (DRMAA API). When i start a job (e.g. : blast), the job runs on the cluster, and produces results output files. But in the history web interface, the job status is in error with this message : malloc: using debugging hooks /bin/sh: module: line 1: syntax error: unexpected end of file /bin/sh: error importing function definition for `module' malloc: using debugging hooks Any clue ? Thanks in advance -- Christophe Caron Station Biologique / Service Informatique et Bio-informatique Place Georges Teissier 29680 Roscoff Analysis and Bioinformatics for Marine Science http://abims.sb-roscoff.fr/ christophe.ca...@sb-roscoff.fr tél: +33 (0)2 98 29 25 43 / +33 (0)6 07 83 54 77 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] ERROR MESSAGE: Running with the -et NO_ET or -et STDOUT option requires a GATK Key file
It seems like GATK authors at Broad really really want you to phone home every time you use their software. I'm getting this error while running the lastest version: ERROR MESSAGE: Running with the -et NO_ET or -et STDOUT option requires a GATK Key file. Please see http://www.broadinstitute.org/gsa/wiki/index.php/Phone_home for more information and instructions on how to obtain a key. From the Phone_home wiki page: How to Obtain a GATK Key To obtain a GATK key, email gsah...@broadinstitute.org with the subject line GATK Key Request. In your email, please provide us with the reason(s) you need to run the GATK with the phone-home feature disabled. Please be as explicit as possible about why you cannot participate in the phone home feature. Note that the key you will be issued is linked to the email address you used to contact us. In general I don't have an issue with phone home features from software providers I trust, and I do completely trust The Broad Institute. Although, this does sound a little draconian how is being imposed. Nevertheless, I would like to ask for an easier way to deactivate the use of -et NO_ET on Galaxy GATK's wrappers. Right now I'm manually commenting the relevant line, but I think this means my mercurial repository won't get any update from upstream, or that I will have to deal with merging. Regards, Carlos ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
