Re: [galaxy-dev] Execution of workflows using API

2011-04-20 Thread Dannon Baker
Taka,

Great, I'm glad the workflow api is now working for you.  I'm not sure what you 
mean with regards to work I'm doing for decrypting hda to actual id, but I will 
say that a History/Dataset API is something many people have asked about and I 
imagine that it will get done sooner rather than later, though I can't specify 
an exact timeframe.

-Dannon

On Apr 20, 2011, at 11:29 AM, t.yamagu...@utoronto.ca wrote:

> Hello Dannon,
> 
> Thanks for the quick response.
> I emailed you as it seems to take some time to get authorization to reply to 
> posts.
> 
> I went though example_watch_folder.py and found the answer to resolve my 
> problem. I thought the ids that returned from 
> library_upload_from_import_dir.py were ldda but it was ld. Thanks.
> 
> I have another question. 
> I would like to access output files from each history using my script. 
> I saw your previous posts and you're working on API to decrypt hda to its 
> actual id.
> Are you planning to release the script in the near future?
> 
> Thank you,
> 
> Taka
> 
> 
> 
> Taka,
> 
> Would you mind sharing the exact command you used to call
> workflow_execute.py?
> 
> It does sound like you're doing something very similar to what
> scripts/api/example_watch_folder.py does.  That script also uploads from
> the file system to a data library and subsequently executes a workflow
> on the uploaded files.  If you haven't already taken a look there, it
> could perhaps serve as another example for you.
> 
> -Dannon
> 
> On 04/19/2011 10:51 AM, Takafumi Yamaguchi wrote:
> 
>> Hello,
>> 
>> I have a question regarding execution of workflows using API
>> (workflow_execute.py).
>> 
>> I am writing a script to automate file uploading and workflow
>> execution using API.
>> 
>> I was able to upload files and the response gave me ids for each file
>> with 32 characters although the README example returned 16 characters.
>> (I used library_upload_from_import_dir.py)
>> 
>> Then I tried to execute a workflow using  workflow_execute.py but
>> it does not seem that the script accepts the ids.
>> 
>> Is there any ways to resolve this issue?
>> 
>> Thank you,
>> 
>> Taka
>> 
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> «  [hide part of quote]


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Re: [galaxy-dev] Execution of workflows using API

2011-04-19 Thread Dannon Baker

Taka,

Would you mind sharing the exact command you used to call 
workflow_execute.py?


It does sound like you're doing something very similar to what 
scripts/api/example_watch_folder.py does.  That script also uploads from 
the file system to a data library and subsequently executes a workflow 
on the uploaded files.  If you haven't already taken a look there, it 
could perhaps serve as another example for you.


-Dannon

On 04/19/2011 10:51 AM, Takafumi Yamaguchi wrote:

Hello,

I have a question regarding execution of workflows using API 
(workflow_execute.py).


I am writing a script to automate file uploading and workflow 
execution using API.


I was able to upload files and the response gave me ids for each file 
with 32 characters although the README example returned 16 characters. 
(I used library_upload_from_import_dir.py)


Then I tried to execute a workflow using  workflow_execute.py but 
it does not seem that the script accepts the ids.


Is there any ways to resolve this issue?

Thank you,

Taka

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[galaxy-dev] Execution of workflows using API

2011-04-19 Thread Takafumi Yamaguchi

Hello,

I have a question regarding execution of workflows using API  
(workflow_execute.py).


I am writing a script to automate file uploading and workflow  
execution using API.


I was able to upload files and the response gave me ids for each file  
with 32 characters although the README example returned 16 characters.  
(I used library_upload_from_import_dir.py)


Then I tried to execute a workflow using 	 workflow_execute.py but it  
does not seem that the script accepts the ids.


Is there any ways to resolve this issue?

Thank you,

Taka

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