Hi Tanguy,
L-A is correct in that you can set using the tool id different cluster
options for different tools. For example I submit different tools to
different queues:
default_cluster_job_runner = drmaa://-q all.q -V/
upload1 = drmaa://-q short.q -V/
tophat = drmaa://-q long.q -V/
cufflinks = drm
Hi Tanguy,
You can set that at the very bottom of your universe_wsgi.ini file. I
did it myself with Torque to set a different behavior for a couple of
tools, it works fine. The related Wiki page is here:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster :)
Best,
L-A
Le 17/02/2012 0
Hi!
Is there a way to specify parameters for the job submission on the
cluster from the tool configuration file?
Let's say I want tool A to be submitted with "-pe smp 8" but tool B
submitted with "-l mem_free=500".
Is it already supported? I could not find it in the wiki.
... or do I have to sta