Re: [galaxy-dev] Galaxy command line API information

2014-02-28 Thread Aaron Petkau
Hello Benoît, I remember seeing projects trying to do something similar (store workflows internally and execute on Galaxy), like http://refinery-platform.org/, so it could be useful to take a look there too. I've been trying to do something similar but with the Java interface to the Galaxy API ht

Re: [galaxy-dev] Galaxy command line API information

2014-02-28 Thread Martin Čech
Dear Benoît Meilhac, In my plugin, I would have to import the workflow, then run it with inputs > listed in the executable command line, and after a successful execution, I > would have to retrieve the outputs generated, then delete the created > workflow and any files related that exist. The in

[galaxy-dev] Galaxy command line API information

2014-02-28 Thread Benoit Meilhac
Dear Sir or Madam, I am working for the University of Westminster on the ER-Flow project (http://www.erflow.eu/home). I'm currently investigating a way to use the galaxy workflow engine with a command line interface in order to support it within our project. The idea would be to develop a plugi