Re: [galaxy-dev] Galaxy crach while visualization

2012-07-25 Thread Chebbi Mohamed Amine
Ok Jeremy ; So I will test the latest release.
Thanks
Amine

2012/7/25 Jeremy Goecks 

> Assuming that you're using Mercurial, which is highly recommended, you can
> type this at the command line:
>
> % hg tip
>
> You probably know that we released a new distribution last week that you
> can update to:
>
> http://wiki.g2.bx.psu.edu/News
>
> Best,
> J.
>
> On Jul 25, 2012, at 7:13 AM, Chebbi Mohamed Amine wrote:
>
> Hello Jeremy !
> Could you tell me how to find the version number of the current
> galaxy-dist to know if I have the latest one or no ?
> Thanks
> Amine
>
> 2012/7/20 Chebbi Mohamed Amine 
>
>> Ok. Thanks for your clarifications. So I will wait for your upcoming
>> distribution of Galaxy and redo the test.
>>
>> Best,
>> Amine
>>
>>
>> 2012/7/20 Jeremy Goecks 
>>
>>> Hmm, this appears to be an indexing error, but there are many potential
>>> causes so that doesn't narrow down the issue much.
>>>
>>> Because you're using galaxy-dist, the simplest thing to do is wait for
>>> our upcoming distribution (which should happen in the next couple days),
>>> upgrade and see if that fixes the problem. Trackster is under active
>>> development, so there are quite a few bug fixes and improvements that will
>>> be available with the next distribution.
>>>
>>> If you're still experiencing problems after upgrading, let us know and
>>> we'll keep trying to figure out what's going on.
>>>
>>> Best,
>>> J.
>>>
>>> On Jul 19, 2012, at 11:03 AM, Chebbi Mohamed Amine wrote:
>>>
>>> HI!
>>>
>>> I'am usig Galaxy-dist.
>>>
>>> SO I have done the test again, I did a simple scrolling to visualize by
>>> the Trackster the different  chromosome regions and then the galaxy crashed
>>> suddenly.
>>>
>>> Here Above what java script log looks :
>>>
>>> 22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5DFailed
>>> to load resource
>>>
>>> http://xxx.x.com/tracks/data?chrom=chr19&low=1449105&high=1449853&mode=Pack&resolution=1.8693312836279785&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5DFailedto
>>>  load resource
>>>
>>> However The paster.log looks more talking this time :
>>>
>>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
>>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=2a8867ca0da68ac1&hda_ldda=hda&filter_cols=%5B%22Score%22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5D
>>> HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
>>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
>>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
>>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Auto&resolution=2.3339731285988483&dataset_id=18644201db609b11&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>>> HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
>>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
>>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
>>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>>> HTTP/1.1" 500 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
>>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
>>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>>> Error - : could not open index
>>> `/srv/Galaxy/Galaxy_test/database/files/_metadata_files/000/metadata_75.dat`
>>>
>>>
>>> 2012/7/19 Jeremy Goecks 
>>>
>>>> JavaScript logs are found in the Web browser. For Safari/Chrome, see
>>>> the View --> Developer --> JavaScript console option; for Firefox, see
>>>> Tools --> Web Developer --> Web Console.
>>>>
>>>> The fact that the Paster log isn't showing errors is problematic. A

Re: [galaxy-dev] Galaxy crach while visualization

2012-07-25 Thread Jeremy Goecks
Assuming that you're using Mercurial, which is highly recommended, you can type 
this at the command line:

% hg tip

You probably know that we released a new distribution last week that you can 
update to:

http://wiki.g2.bx.psu.edu/News

Best,
J.

On Jul 25, 2012, at 7:13 AM, Chebbi Mohamed Amine wrote:

> Hello Jeremy !
> Could you tell me how to find the version number of the current galaxy-dist 
> to know if I have the latest one or no ?
> Thanks
> Amine
> 
> 2012/7/20 Chebbi Mohamed Amine 
> Ok. Thanks for your clarifications. So I will wait for your upcoming 
> distribution of Galaxy and redo the test.
> 
> Best,
> Amine
> 
> 
> 2012/7/20 Jeremy Goecks 
> Hmm, this appears to be an indexing error, but there are many potential 
> causes so that doesn't narrow down the issue much.
> 
> Because you're using galaxy-dist, the simplest thing to do is wait for our 
> upcoming distribution (which should happen in the next couple days), upgrade 
> and see if that fixes the problem. Trackster is under active development, so 
> there are quite a few bug fixes and improvements that will be available with 
> the next distribution.
> 
> If you're still experiencing problems after upgrading, let us know and we'll 
> keep trying to figure out what's going on.
> 
> Best,
> J.
> 
> On Jul 19, 2012, at 11:03 AM, Chebbi Mohamed Amine wrote:
> 
>> HI!
>> 
>> I'am usig Galaxy-dist.
>> 
>> SO I have done the test again, I did a simple scrolling to visualize by the 
>> Trackster the different  chromosome regions and then the galaxy crashed 
>> suddenly.
>> 
>> Here Above what java script log looks :
>> 
>> 22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5DFailed
>>  to load resource
>> http://xxx.x.com/tracks/data?chrom=chr19&low=1449105&high=1449853&mode=Pack&resolution=1.8693312836279785&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5DFailed
>>  to load resource
>> 
>> However The paster.log looks more talking this time :
>> 
>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET 
>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=2a8867ca0da68ac1&hda_ldda=hda&filter_cols=%5B%22Score%22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5D
>>  HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e"; 
>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko) 
>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET 
>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Auto&resolution=2.3339731285988483&dataset_id=18644201db609b11&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>>  HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e"; 
>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko) 
>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET 
>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>>  HTTP/1.1" 500 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e"; 
>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko) 
>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>> Error - : could not open index 
>> `/srv/Galaxy/Galaxy_test/database/files/_metadata_files/000/metadata_75.dat` 
>> 
>> 2012/7/19 Jeremy Goecks 
>> JavaScript logs are found in the Web browser. For Safari/Chrome, see the 
>> View --> Developer --> JavaScript console option; for Firefox, see Tools --> 
>> Web Developer --> Web Console.
>> 
>> The fact that the Paster log isn't showing errors is problematic. Are there 
>> certain scenarios where Trackster/Galaxy is more likely to crash? Finally, 
>> are you using galaxy-dist or galaxy-central?
>> 
>> Best,
>> J.
>> 
>> 
>> On Jul 18, 2012, at 8:50 AM, Chebbi Mohamed Amine wrote:
>> 
>>> 
>>> 
>>> -- Forwarded message --
>>> From: Chebbi Mohamed Amine 
>>> Date: 2012/7/18
>>> Subject: Re: [galaxy-dev] Galaxy crach while visualization
&g

Re: [galaxy-dev] Galaxy crach while visualization

2012-07-25 Thread Chebbi Mohamed Amine
Hello Jeremy !
Could you tell me how to find the version number of the current galaxy-dist
to know if I have the latest one or no ?
Thanks
Amine

2012/7/20 Chebbi Mohamed Amine 

> Ok. Thanks for your clarifications. So I will wait for your upcoming
> distribution of Galaxy and redo the test.
>
> Best,
> Amine
>
>
> 2012/7/20 Jeremy Goecks 
>
>> Hmm, this appears to be an indexing error, but there are many potential
>> causes so that doesn't narrow down the issue much.
>>
>> Because you're using galaxy-dist, the simplest thing to do is wait for
>> our upcoming distribution (which should happen in the next couple days),
>> upgrade and see if that fixes the problem. Trackster is under active
>> development, so there are quite a few bug fixes and improvements that will
>> be available with the next distribution.
>>
>> If you're still experiencing problems after upgrading, let us know and
>> we'll keep trying to figure out what's going on.
>>
>> Best,
>> J.
>>
>> On Jul 19, 2012, at 11:03 AM, Chebbi Mohamed Amine wrote:
>>
>> HI!
>>
>> I'am usig Galaxy-dist.
>>
>> SO I have done the test again, I did a simple scrolling to visualize by
>> the Trackster the different  chromosome regions and then the galaxy crashed
>> suddenly.
>>
>> Here Above what java script log looks :
>>
>> 22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5DFailed
>> to load resource
>>
>> http://xxx.x.com/tracks/data?chrom=chr19&low=1449105&high=1449853&mode=Pack&resolution=1.8693312836279785&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5DFailedto
>>  load resource
>>
>> However The paster.log looks more talking this time :
>>
>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=2a8867ca0da68ac1&hda_ldda=hda&filter_cols=%5B%22Score%22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5D
>> HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Auto&resolution=2.3339731285988483&dataset_id=18644201db609b11&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>> HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
>> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>> HTTP/1.1" 500 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
>> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
>> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
>> Error - : could not open index
>> `/srv/Galaxy/Galaxy_test/database/files/_metadata_files/000/metadata_75.dat`
>>
>>
>> 2012/7/19 Jeremy Goecks 
>>
>>> JavaScript logs are found in the Web browser. For Safari/Chrome, see the
>>> View --> Developer --> JavaScript console option; for Firefox, see Tools
>>> --> Web Developer --> Web Console.
>>>
>>> The fact that the Paster log isn't showing errors is problematic. Are
>>> there certain scenarios where Trackster/Galaxy is more likely to crash?
>>> Finally, are you using galaxy-dist or galaxy-central?
>>>
>>> Best,
>>> J.
>>>
>>>
>>> On Jul 18, 2012, at 8:50 AM, Chebbi Mohamed Amine wrote:
>>>
>>>
>>>
>>> -- Forwarded message --
>>> From: Chebbi Mohamed Amine 
>>> Date: 2012/7/18
>>> Subject: Re: [galaxy-dev] Galaxy crach while visualization
>>> To: Jeremy Goecks 
>>>
>>>
>>> Hello Jeremy!
>>> Thanks for your response. Yes the paster.log is not complaining. Excuse
>>> me where I can found the javascript log. In /var/log I haven't a

Re: [galaxy-dev] Galaxy crach while visualization

2012-07-20 Thread Chebbi Mohamed Amine
Ok. Thanks for your clarifications. So I will wait for your upcoming
distribution of Galaxy and redo the test.

Best,
Amine

2012/7/20 Jeremy Goecks 

> Hmm, this appears to be an indexing error, but there are many potential
> causes so that doesn't narrow down the issue much.
>
> Because you're using galaxy-dist, the simplest thing to do is wait for our
> upcoming distribution (which should happen in the next couple days),
> upgrade and see if that fixes the problem. Trackster is under active
> development, so there are quite a few bug fixes and improvements that will
> be available with the next distribution.
>
> If you're still experiencing problems after upgrading, let us know and
> we'll keep trying to figure out what's going on.
>
> Best,
> J.
>
> On Jul 19, 2012, at 11:03 AM, Chebbi Mohamed Amine wrote:
>
> HI!
>
> I'am usig Galaxy-dist.
>
> SO I have done the test again, I did a simple scrolling to visualize by
> the Trackster the different  chromosome regions and then the galaxy crashed
> suddenly.
>
> Here Above what java script log looks :
>
> 22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5DFailed
> to load resource
>
> http://xxx.x.com/tracks/data?chrom=chr19&low=1449105&high=1449853&mode=Pack&resolution=1.8693312836279785&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5DFailedto
>  load resource
>
> However The paster.log looks more talking this time :
>
> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=2a8867ca0da68ac1&hda_ldda=hda&filter_cols=%5B%22Score%22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5D
> HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Auto&resolution=2.3339731285988483&dataset_id=18644201db609b11&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
> HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
> HTTP/1.1" 500 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
> Error - : could not open index
> `/srv/Galaxy/Galaxy_test/database/files/_metadata_files/000/metadata_75.dat`
>
>
> 2012/7/19 Jeremy Goecks 
>
>> JavaScript logs are found in the Web browser. For Safari/Chrome, see the
>> View --> Developer --> JavaScript console option; for Firefox, see Tools
>> --> Web Developer --> Web Console.
>>
>> The fact that the Paster log isn't showing errors is problematic. Are
>> there certain scenarios where Trackster/Galaxy is more likely to crash?
>> Finally, are you using galaxy-dist or galaxy-central?
>>
>> Best,
>> J.
>>
>>
>> On Jul 18, 2012, at 8:50 AM, Chebbi Mohamed Amine wrote:
>>
>>
>>
>> -- Forwarded message --
>> From: Chebbi Mohamed Amine 
>> Date: 2012/7/18
>> Subject: Re: [galaxy-dev] Galaxy crach while visualization
>> To: Jeremy Goecks 
>>
>>
>> Hello Jeremy!
>> Thanks for your response. Yes the paster.log is not complaining. Excuse
>> me where I can found the javascript log. In /var/log I haven't any file
>> related to javascript.log.
>> Thanks
>> Amine
>>
>>
>> 2012/7/17 Jeremy Goecks 
>>
>>> Hello Amine,
>>>
>>> The paster log looks normal, and Postgre log is standard given the
>>> crash. Was there anything out of the ordinary that you can spot in the
>>> paster log and/or Javascript log in your Web browser?
>>>
>>> Thanks,
>>> J.
>>>
>>> On Jul 17, 2012, at 6:53 AM, Chebbi Mohamed Amine wrote:
&g

Re: [galaxy-dev] Galaxy crach while visualization

2012-07-20 Thread Jeremy Goecks
Hmm, this appears to be an indexing error, but there are many potential causes 
so that doesn't narrow down the issue much.

Because you're using galaxy-dist, the simplest thing to do is wait for our 
upcoming distribution (which should happen in the next couple days), upgrade 
and see if that fixes the problem. Trackster is under active development, so 
there are quite a few bug fixes and improvements that will be available with 
the next distribution.

If you're still experiencing problems after upgrading, let us know and we'll 
keep trying to figure out what's going on.

Best,
J.

On Jul 19, 2012, at 11:03 AM, Chebbi Mohamed Amine wrote:

> HI!
> 
> I'am usig Galaxy-dist.
> 
> SO I have done the test again, I did a simple scrolling to visualize by the 
> Trackster the different  chromosome regions and then the galaxy crashed 
> suddenly.
> 
> Here Above what java script log looks :
> 
> 22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5DFailed
>  to load resource
> http://xxx.x.com/tracks/data?chrom=chr19&low=1449105&high=1449853&mode=Pack&resolution=1.8693312836279785&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5DFailed
>  to load resource
> 
> However The paster.log looks more talking this time :
> 
> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET 
> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=2a8867ca0da68ac1&hda_ldda=hda&filter_cols=%5B%22Score%22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5D
>  HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e"; 
> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko) 
> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET 
> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Auto&resolution=2.3339731285988483&dataset_id=18644201db609b11&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>  HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e"; 
> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko) 
> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
> xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET 
> /tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>  HTTP/1.1" 500 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e"; 
> "Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko) 
> Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
> Error - : could not open index 
> `/srv/Galaxy/Galaxy_test/database/files/_metadata_files/000/metadata_75.dat` 
> 
> 2012/7/19 Jeremy Goecks 
> JavaScript logs are found in the Web browser. For Safari/Chrome, see the View 
> --> Developer --> JavaScript console option; for Firefox, see Tools --> Web 
> Developer --> Web Console.
> 
> The fact that the Paster log isn't showing errors is problematic. Are there 
> certain scenarios where Trackster/Galaxy is more likely to crash? Finally, 
> are you using galaxy-dist or galaxy-central?
> 
> Best,
> J.
> 
> 
> On Jul 18, 2012, at 8:50 AM, Chebbi Mohamed Amine wrote:
> 
>> 
>> 
>> -- Forwarded message --
>> From: Chebbi Mohamed Amine 
>> Date: 2012/7/18
>> Subject: Re: [galaxy-dev] Galaxy crach while visualization
>> To: Jeremy Goecks 
>> 
>> 
>> Hello Jeremy!
>> Thanks for your response. Yes the paster.log is not complaining. Excuse me 
>> where I can found the javascript log. In /var/log I haven't any file related 
>> to javascript.log.
>> Thanks 
>> Amine
>> 
>> 
>> 2012/7/17 Jeremy Goecks 
>> Hello Amine,
>> 
>> The paster log looks normal, and Postgre log is standard given the crash. 
>> Was there anything out of the ordinary that you can spot in the paster log 
>> and/or Javascript log in your Web browser?
>> 
>> Thanks,
>> J.
>> 
>> On Jul 17, 2012, at 6:53 AM, Chebbi Mohamed Amine wrote:
>> 
>>> Hello Galaxy team !
>>> 
>>> I have e strange problem whith my Galaxy trackster visualization . While 
>>> viewing bookmarked regions in my visualisation the whole   
>>> Galaxy process crashed and needed to be restarted, mainly when I use Chrome 

Re: [galaxy-dev] Galaxy crach while visualization

2012-07-19 Thread Chebbi Mohamed Amine
HI!

I'am usig Galaxy-dist.

SO I have done the test again, I did a simple scrolling to visualize by the
Trackster the different  chromosome regions and then the galaxy crashed
suddenly.

Here Above what java script log looks :

22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5DFailed
to load resource
http://xxx.x.com/tracks/data?chrom=chr19&low=1449105&high=1449853&mode=Pack&resolution=1.8693312836279785&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5DFailedto
load resource

However The paster.log looks more talking this time :

xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
/tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=2a8867ca0da68ac1&hda_ldda=hda&filter_cols=%5B%22Score%22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5D
HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
"Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
/tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Auto&resolution=2.3339731285988483&dataset_id=18644201db609b11&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
HTTP/1.1" 200 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
"Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
/tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
HTTP/1.1" 500 - "http://..com/tracks/browser?id=df7a1f0c02a5b08e";
"Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
Error - : could not open index
`/srv/Galaxy/Galaxy_test/database/files/_metadata_files/000/metadata_75.dat`


2012/7/19 Jeremy Goecks 

> JavaScript logs are found in the Web browser. For Safari/Chrome, see the
> View --> Developer --> JavaScript console option; for Firefox, see Tools
> --> Web Developer --> Web Console.
>
> The fact that the Paster log isn't showing errors is problematic. Are
> there certain scenarios where Trackster/Galaxy is more likely to crash?
> Finally, are you using galaxy-dist or galaxy-central?
>
> Best,
> J.
>
>
> On Jul 18, 2012, at 8:50 AM, Chebbi Mohamed Amine wrote:
>
>
>
> -- Forwarded message --
> From: Chebbi Mohamed Amine 
> Date: 2012/7/18
> Subject: Re: [galaxy-dev] Galaxy crach while visualization
> To: Jeremy Goecks 
>
>
> Hello Jeremy!
> Thanks for your response. Yes the paster.log is not complaining. Excuse me
> where I can found the javascript log. In /var/log I haven't any file
> related to javascript.log.
> Thanks
> Amine
>
>
> 2012/7/17 Jeremy Goecks 
>
>> Hello Amine,
>>
>> The paster log looks normal, and Postgre log is standard given the crash.
>> Was there anything out of the ordinary that you can spot in the paster log
>> and/or Javascript log in your Web browser?
>>
>> Thanks,
>> J.
>>
>> On Jul 17, 2012, at 6:53 AM, Chebbi Mohamed Amine wrote:
>>
>> Hello Galaxy team !
>>
>> I have e strange problem whith my Galaxy trackster visualization . While
>> viewing bookmarked regions in my visualisation the whole
>> Galaxy process crashed and needed to be restarted, mainly when I use
>> Chrome browser.
>>
>> Above the Paster.log :
>>
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=f4b17be90d9b3c9d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/gala

Re: [galaxy-dev] Galaxy crach while visualization

2012-07-19 Thread Jeremy Goecks
JavaScript logs are found in the Web browser. For Safari/Chrome, see the View 
--> Developer --> JavaScript console option; for Firefox, see Tools --> Web 
Developer --> Web Console.

The fact that the Paster log isn't showing errors is problematic. Are there 
certain scenarios where Trackster/Galaxy is more likely to crash? Finally, are 
you using galaxy-dist or galaxy-central?

Best,
J.


On Jul 18, 2012, at 8:50 AM, Chebbi Mohamed Amine wrote:

> 
> 
> -- Forwarded message --
> From: Chebbi Mohamed Amine 
> Date: 2012/7/18
> Subject: Re: [galaxy-dev] Galaxy crach while visualization
> To: Jeremy Goecks 
> 
> 
> Hello Jeremy!
> Thanks for your response. Yes the paster.log is not complaining. Excuse me 
> where I can found the javascript log. In /var/log I haven't any file related 
> to javascript.log.
> Thanks 
> Amine
> 
> 
> 2012/7/17 Jeremy Goecks 
> Hello Amine,
> 
> The paster log looks normal, and Postgre log is standard given the crash. Was 
> there anything out of the ordinary that you can spot in the paster log and/or 
> Javascript log in your Web browser?
> 
> Thanks,
> J.
> 
> On Jul 17, 2012, at 6:53 AM, Chebbi Mohamed Amine wrote:
> 
>> Hello Galaxy team !
>> 
>> I have e strange problem whith my Galaxy trackster visualization . While 
>> viewing bookmarked regions in my visualisation the whole   
>> Galaxy process crashed and needed to be restarted, mainly when I use Chrome 
>> browser.
>>  
>> Above the Paster.log :
>> 
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
>> /galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=f4b17be90d9b3c9d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>>  HTTP/1.1" 200 - 
>> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
>> /galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>>  HTTP/1.1" 200 - 
>> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
>> /galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>>  HTTP/1.1" 200 - 
>> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
>> /galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>>  HTTP/1.1" 200 - 
>> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
>> /galaxy/tracks/data?chrom=chr19&low=1180427&high=1181609&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>>  HTTP/1.1" 200 - 
>> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
>> /galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>>  HTTP/1.1" 200 - 
>> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) 
>> AppleWebKit/536.11 (KHTML, like Gecko) Chrome/20.0.

Re: [galaxy-dev] Galaxy crach while visualization

2012-07-17 Thread Jeremy Goecks
Hello Amine,

The paster log looks normal, and Postgre log is standard given the crash. Was 
there anything out of the ordinary that you can spot in the paster log and/or 
Javascript log in your Web browser?

Thanks,
J.

On Jul 17, 2012, at 6:53 AM, Chebbi Mohamed Amine wrote:

> Hello Galaxy team !
> 
> I have e strange problem whith my Galaxy trackster visualization . While 
> viewing bookmarked regions in my visualisation the whole   
> Galaxy process crashed and needed to be restarted, mainly when I use Chrome 
> browser.
>  
> Above the Paster.log :
> 
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=f4b17be90d9b3c9d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=1180427&high=1181609&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) 
> AppleWebKit/536.11 (KHTML, like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:37 +0200] "GET 
> /galaxy/tracks/data?chrom=chr19&low=814128&high=815310&mode=Auto&resolution=2.954022988505747&dataset_id=7710e7c5028b7c3b&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>  HTTP/1.1" 200 - 
> "http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output"; 
> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML, 
> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
> 
> PostgreSQL saw the crach :
> 
> 2012-07-12 12:56:40 CEST LOG:  could not receive data from client: Connection 
> reset by peer
> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
> 2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:00:46.907 
> user=user database=database host=server port=33106
> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
> 2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:03:45.206 
> user=user database=database host=server port=42867
> 

[galaxy-dev] Galaxy crach while visualization

2012-07-17 Thread Chebbi Mohamed Amine
Hello Galaxy team !

I have e strange problem whith my Galaxy trackster visualization . While
viewing bookmarked regions in my visualisation the whole
Galaxy process crashed and needed to be restarted, mainly when I use Chrome
browser.

Above the Paster.log :

xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=f4b17be90d9b3c9d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
like Gecko) Chrome/20.0.1132.47 Safari/536.11"
xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
like Gecko) Chrome/20.0.1132.47 Safari/536.11"
xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
like Gecko) Chrome/20.0.1132.47 Safari/536.11"
xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
like Gecko) Chrome/20.0.1132.47 Safari/536.11"
xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=1180427&high=1181609&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
like Gecko) Chrome/20.0.1132.47 Safari/536.11"
xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4)
AppleWebKit/536.11 (KHTML, like Gecko) Chrome/20.0.1132.47 Safari/536.11"
xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
like Gecko) Chrome/20.0.1132.47 Safari/536.11"
xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:37 +0200] "GET
/galaxy/tracks/data?chrom=chr19&low=814128&high=815310&mode=Auto&resolution=2.954022988505747&dataset_id=7710e7c5028b7c3b&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
HTTP/1.1" 200 - "
http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
like Gecko) Chrome/20.0.1132.47 Safari/536.11"

PostgreSQL saw the crach :

2012-07-12 12:56:40 CEST LOG:  could not receive data from client:
Connection reset by peer
2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:00:46.907
user=user database=database host=server port=33106
2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:03:45.206
user=user database=database host=server port=42867
2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:06:43.257
user=user database=database host=server port=56383
2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:04:22.120
user=user database=database host=server port=42663
2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:04:22.596
user=user database=database host=server port=42656


Thanks
Amine
___
Please keep all repl