Re: [galaxy-dev] History items get REMOVED when using the API to run workflows

2012-07-05 Thread Anthonius deBoer
OK...I tried this and it no longer removes the entries from the history...Thanks!I do see that each of the new histories I create still have a reference to some of the other files I pick up from the library (such as dbSNP) but those entries in the history have the number "None" in stead of the usua

Re: [galaxy-dev] History items get REMOVED when using the API to run workflows

2012-07-05 Thread Dannon Baker
On Jul 5, 2012, at 5:40 PM, Anthonius deBoer wrote: > WOW...I guess I know how you guys that designed the API think :) > > Small other question...Is it possible (yet) to pass a parameter to the API > yet, that is NOT an input step? > Things that get defined in the workflow step such as {Analysis_

Re: [galaxy-dev] History items get REMOVED when using the API to run workflows

2012-07-05 Thread Anthonius deBoer
WOW...I guess I know how you guys that designed the API think :)Small other question...Is it possible (yet) to pass a parameter to the API yet, that is NOT an input step?Things that get defined in the workflow step such as {Analysis_Run} that get filled in at runtime?Now it reverts to "X__oc__Analy

Re: [galaxy-dev] History items get REMOVED when using the API to run workflows

2012-07-05 Thread Dannon Baker
On Jul 5, 2012, at 5:33 PM, Thon Deboer wrote: > data['no_add_to_history']="True" ? Should do it. ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists,

Re: [galaxy-dev] History items get REMOVED when using the API to run workflows

2012-07-05 Thread Thon Deboer
Thanks for the fast reply... How do I add this to the "payload"? Is it part of ds_map or something else? data['workflow_id'] = data['history'] = data['ds_map'] = {} data['no_add_to_history']="True" ? or is it part of the actual definition of the input step? Thanks T

Re: [galaxy-dev] History items get REMOVED when using the API to run workflows

2012-07-05 Thread Dannon Baker
I see the bug you're running into. As a temporary solution, executing workflows via the API with 'no_add_to_history' in the payload should work as expected. I'll have a permanent fix out shortly. -Dannon On Jul 5, 2012, at 5:12 PM, Thon Deboer wrote: > Hi, > > I am continueing to struggle w

[galaxy-dev] History items get REMOVED when using the API to run workflows

2012-07-05 Thread Thon Deboer
Hi, I am continueing to struggle with the API I have created a workflow execution engine that submits a workflow using the examples in the API (scripts/api). When I run the WF on data in the LIBRARIES everything works fine. But when I choose a HISTORY as my source of data, the WF executes f