Hi again,
Can one via the API upload a file programmatically just like one does using
the UI?
best,
Leandro
On Wed, Apr 27, 2011 at 3:43 PM, Dannon Baker wrote:
> Not currently, though the API is being continually extended with new
> features as the need arises.
>
> -Dannon
>
> On Apr 27, 2011
Not currently, though the API is being continually extended with new features
as the need arises.
-Dannon
On Apr 27, 2011, at 9:40 AM, Leandro Hermida wrote:
> Hi Dannon,
>
> Thanks for your replies and advice, this leads me to a quesion... is it
> possible to execute a tool job via the Galaxy
On Thu, Apr 21, 2011 at 2:40 PM, Dannon Baker wrote:
> Leandro,
>
> I see what you mean, I misunderstood your original goal. There currently
> isn't a way to execute single tools in this fashion.
>
> It isn't exactly straightforward, but you could construct a workflow that
> consisted of two ste
Leandro,
I see what you mean, I misunderstood your original goal. There currently isn't
a way to execute single tools in this fashion.
It isn't exactly straightforward, but you could construct a workflow that
consisted of two steps-- an Input Dataset step, and whatever tool you wanted to
use,
Hi again,
Sorry to maybe not understand how to get started, but I'm trying for
something even without the added complexity of a workflow.
If you could point me into the right direction: how would I have a single
tool where on the tool form there is a multi-select of certain datasets in
the user's
Is the server below down? I'm trying to get there this morning and having
no luck...
https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project#Loop_over_files
_in_a_directory
Dave
On 4/15/11 12:16 PM, "Pieter Neerincx" wrote:
> Hi,
>
> You're not alone with this request! Unfortunately I
You are correct in that, so far, there isn't any formal documentation of
the API, and it should still be considered a beta feature. There is a
workflow API, and the best way to see how it works right now is, like
you mentioned, browsing the scripts/api directory for usage examples or
reading t
Leandro,
As far as I can tell there are no real docs for the API. The best I’ve been
able to find is what’s under the scripts/api directory. I believe the API is
still considered a “beta” at best.
Galaxy team, are there any updates on the API, documentation plans, etc?
Thanks,
Dave
On 4/
Hi Dave,
Thanks for the feedback, this to me would be a very useful feature to be
able to spawn multiple same jobs or workflows from one tool form using
different input datasets selected with multi select and all other form
parameters being the same.
Where are the docs and information for the Gal
Hi,
You're not alone with this request! Unfortunately I wasn't able to join the
2-day Galaxy Hackathon, but I heard from a colleague who just came back that
this was one of the topics they worked on. At the end of the hackathon they had
a working prototype:
https://wiki.nbic.nl/index.php/NBIC
Hi
Our production pipeline does this on LSF through job arrays. It would be
good if Galaxy supported job arrays
Marina
On 15/04/2011 13:14, Leandro Hermida wrote:
Hi everyone,
I was wondering what would be the way in Galaxy to program the following:
- User clicks on a tool and form is disp
I've essentially asked the same question of the list in the past and gotten no
real response.
I have the same interest, but from a workflow perspective.
* A module that allows me to select multiple datafiles (say fastq files)
* Then pass each data file to a separate instance of a workflow that r
Hi everyone,
I was wondering what would be the way in Galaxy to program the following:
- User clicks on a tool and form is displayed
- They use a select multi menu in the form to pick lets say X multiple
datasets from their history
- When they click submit the tool launches X number of jobs in th
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