Re: [galaxy-dev] New release : display problem
Hello All,
I've the same problem with Firefox (it works with Chrome).
With Firebug, I've got this message :
data.TabularDataset is not a constructor
Firebug shows me the same lines of code than Carlos :
// Set up dataset and attributes.
var dataset = new data.TabularDataset( {misc_blurb: 33 lines,
name:
Galaxy12-[Filtered_table__Remove_columns_on_data_11].tax.summary,
data_type: tabular, metadata_columns: 4, deleted: false,
metadata_data_lines: 33, metadata_column_names: null,
genome_build: ?, purged: false, visible: true, state: ok,
metadata_comment_lines: null, file_size: 969, model_class:
HistoryDatasetAssociation, metadata_column_types: [int, str,
str, int], id: 9664, misc_info: uploaded tabular file,
metadata_dbkey: ?} );
Regards,
Cyril
On 02/15/2013 07:09 PM, Carlos Borroto wrote:
On Fri, Feb 15, 2013 at 11:08 AM, Dannon Bakerdannon.ba...@gmail.com wrote:
Well, (un)fortunately this file works for me in both firefox and
chrome on the current galaxy-dist. Just to confirm -- when you click
the eye, it doesn't download the file either, right -- nothing at all
happens?
In chrome, could you open the console (Tools - Javascript Console or
Ctrl+Shift+J) and then try again, letting me know if there are any
errors that show up?
This is the error I see in Chrome Javascript Console:
Uncaught TypeError: undefined is not a function
And this is the code around the line causing the error:
// Set up dataset and attributes.
var dataset = new data.TabularDataset( {misc_blurb: 8,024 lines,
name: Join two Datasets on data 28 and data 36, data_type:
tabular, metadata_columns: 5, deleted: false,
metadata_data_lines: 8024, metadata_column_names: null,
genome_build: build37.2, purged: false, visible: true,
state: ok, metadata_comment_lines: null, file_size: 1569994,
model_class: HistoryDatasetAssociation, metadata_column_types:
[str, float, list, str, int], id: 110, misc_info: ,
metadata_dbkey: build37.2} );
dataset.set('chunk_url',
/datasets/f30a35c999095ed7/display);
Please let me know if there is something else I can do to help solve this issue.
Regards,
Carlos
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--
Cyril Monjeaud
Equipe Symbiose / Plate-forme GenOuest
Bureau D156
IRISA-INRIA, Campus de Beaulieu
35042 Rennes cedex, France
Tél: +33 (0) 2 99 84 74 17
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Re: [galaxy-dev] New release : display problem
Hi, Enclosed is a dataset that I am not able to see anymore. I don't see any error in the log (but maybe I missed it !). To answer to Carlos, I have the problem with Firefox and Chrome. Cheers, Mathieu - Mail original - De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: galaxy-dev@lists.bx.psu.edu Envoyé: Jeudi 14 Février 2013 17:01:02 Objet: Re: [galaxy-dev] New release : display problem Could you share with me a file that reproduces this behavior? I'm unable to do so on a fresh -dist clone after trying various files and file types. Do you see any errors in the console or galaxy log when this happens? On Thu, Feb 14, 2013 at 2:34 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi, Thanks for the answer. It is after the new galaxy-dist release and if a type is affected, all its children types are too. For example the tabular but that's not the only one. It's is not a question of size I think because very small datasets are not displayed neither. Cheers, Mathieu De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: galaxy-dev@lists.bx.psu.edu Envoyé: Jeudi 14 Février 2013 00:55:46 Objet: Re: [galaxy-dev] New release : display problem Mathieu, To clarify -- is this after the new galaxy-dist release, or new code in galaxy-central? And, is this *any* tabular file? Or just ones of a particular size? (Files of 50 columns are handled as a special case, for instance) -Dannon On Wed, Feb 13, 2013 at 11:29 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi there, I am using my own Galaxy instance and since I updated, I can't see file of several datatypes (for example the 'tabular') clicking on the eye icon. Is that a problem linked to the new release ? Cheers, Mathieu Bahin ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ taxlevel rankID taxon daughterlevels total AM1_106m AM1_119m AM1_121m AM1_143m AM1_18m AM1_19 AM1_1m AM1_20m AM1_21m AM1_28 AM1_29 AM1_2m AM1_30m AM1_32m AM1_37m AM1_51m AM1_55 AM1_58 AM1_61 AM1_63m AM1_68m AM1_7 AM1_70m AM1_76m AM1_81m AM1_84m AM1_89m AM1_94m 0 0 Root 1 5 1 1 1 1 1 1 1 1 1 2 1 1 2 3 1 1 3 3 1 1 1 2 1 1 1 1 3 1 1 0.3 Eukaryota 2 5 1 1 1 1 1 1 1 1 1 2 1 1 2 3 1 1 3 3 1 1 1 2 1 1 1 1 3 1 2 0.3.15 Opisthokonta 1 3 0 1 1 0 1 0 1 1 0 2 1 0 1 2 1 0 3 3 1 1 1 1 0 1 1 1 1 1 3 0.3.15.1 Fungi 2 3 0 1 1 0 1 0 1 1 0 2 1 0 1 2 1 0 3 3 1 1 1 1 0 1 1 1 1 1 4 0.3.15.1.5 Fungi 1 2 0 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 2 2 1 1 1 1 0 1 1 1 1 1 5 0.3.15.1.5.1 Basal fungi 1 2 0 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 2 2 1 1 1 1 0 1 1 1 1 1 6 0.3.15.1.5.1.1 Basal fungi 1 2 0 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 2 2 1 1 1 1 0 1 1 1 1 1 4 0.3.15.1.10 unclassified 1 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 2 0.3.20 unclassified 1 2 1 0 0 1 0 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 1 0 0 0 2 0 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] New release : display problem
Well, (un)fortunately this file works for me in both firefox and chrome on the current galaxy-dist. Just to confirm -- when you click the eye, it doesn't download the file either, right -- nothing at all happens? In chrome, could you open the console (Tools - Javascript Console or Ctrl+Shift+J) and then try again, letting me know if there are any errors that show up? On Fri, Feb 15, 2013 at 3:32 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi, Enclosed is a dataset that I am not able to see anymore. I don't see any error in the log (but maybe I missed it !). To answer to Carlos, I have the problem with Firefox and Chrome. Cheers, Mathieu - Mail original - De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: galaxy-dev@lists.bx.psu.edu Envoyé: Jeudi 14 Février 2013 17:01:02 Objet: Re: [galaxy-dev] New release : display problem Could you share with me a file that reproduces this behavior? I'm unable to do so on a fresh -dist clone after trying various files and file types. Do you see any errors in the console or galaxy log when this happens? On Thu, Feb 14, 2013 at 2:34 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi, Thanks for the answer. It is after the new galaxy-dist release and if a type is affected, all its children types are too. For example the tabular but that's not the only one. It's is not a question of size I think because very small datasets are not displayed neither. Cheers, Mathieu De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: galaxy-dev@lists.bx.psu.edu Envoyé: Jeudi 14 Février 2013 00:55:46 Objet: Re: [galaxy-dev] New release : display problem Mathieu, To clarify -- is this after the new galaxy-dist release, or new code in galaxy-central? And, is this *any* tabular file? Or just ones of a particular size? (Files of 50 columns are handled as a special case, for instance) -Dannon On Wed, Feb 13, 2013 at 11:29 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi there, I am using my own Galaxy instance and since I updated, I can't see file of several datatypes (for example the 'tabular') clicking on the eye icon. Is that a problem linked to the new release ? Cheers, Mathieu Bahin ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] New release : display problem
On Fri, Feb 15, 2013 at 11:08 AM, Dannon Baker dannon.ba...@gmail.com wrote:
Well, (un)fortunately this file works for me in both firefox and
chrome on the current galaxy-dist. Just to confirm -- when you click
the eye, it doesn't download the file either, right -- nothing at all
happens?
In chrome, could you open the console (Tools - Javascript Console or
Ctrl+Shift+J) and then try again, letting me know if there are any
errors that show up?
This is the error I see in Chrome Javascript Console:
Uncaught TypeError: undefined is not a function
And this is the code around the line causing the error:
// Set up dataset and attributes.
var dataset = new data.TabularDataset( {misc_blurb: 8,024 lines,
name: Join two Datasets on data 28 and data 36, data_type:
tabular, metadata_columns: 5, deleted: false,
metadata_data_lines: 8024, metadata_column_names: null,
genome_build: build37.2, purged: false, visible: true,
state: ok, metadata_comment_lines: null, file_size: 1569994,
model_class: HistoryDatasetAssociation, metadata_column_types:
[str, float, list, str, int], id: 110, misc_info: ,
metadata_dbkey: build37.2} );
dataset.set('chunk_url',
/datasets/f30a35c999095ed7/display);
Please let me know if there is something else I can do to help solve this issue.
Regards,
Carlos
___
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in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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Re: [galaxy-dev] New release : display problem
Hi, Thanks for the answer. It is after the new galaxy-dist release and if a type is affected, all its children types are too. For example the tabular but that's not the only one. It's is not a question of size I think because very small datasets are not displayed neither. Cheers, Mathieu - Mail original - De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: galaxy-dev@lists.bx.psu.edu Envoyé: Jeudi 14 Février 2013 00:55:46 Objet: Re: [galaxy-dev] New release : display problem Mathieu, To clarify -- is this after the new galaxy-dist release, or new code in galaxy-central? And, is this *any* tabular file? Or just ones of a particular size? (Files of 50 columns are handled as a special case, for instance) -Dannon On Wed, Feb 13, 2013 at 11:29 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi there, I am using my own Galaxy instance and since I updated, I can't see file of several datatypes (for example the 'tabular') clicking on the eye icon. Is that a problem linked to the new release ? Cheers, Mathieu Bahin ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] New release : display problem
Could you share with me a file that reproduces this behavior? I'm unable to do so on a fresh -dist clone after trying various files and file types. Do you see any errors in the console or galaxy log when this happens? On Thu, Feb 14, 2013 at 2:34 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi, Thanks for the answer. It is after the new galaxy-dist release and if a type is affected, all its children types are too. For example the tabular but that's not the only one. It's is not a question of size I think because very small datasets are not displayed neither. Cheers, Mathieu De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: galaxy-dev@lists.bx.psu.edu Envoyé: Jeudi 14 Février 2013 00:55:46 Objet: Re: [galaxy-dev] New release : display problem Mathieu, To clarify -- is this after the new galaxy-dist release, or new code in galaxy-central? And, is this *any* tabular file? Or just ones of a particular size? (Files of 50 columns are handled as a special case, for instance) -Dannon On Wed, Feb 13, 2013 at 11:29 AM, Mathieu Bahin mathieu.ba...@irisa.fr wrote: Hi there, I am using my own Galaxy instance and since I updated, I can't see file of several datatypes (for example the 'tabular') clicking on the eye icon. Is that a problem linked to the new release ? Cheers, Mathieu Bahin ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] New release : display problem
On Thu, Feb 14, 2013 at 11:01 AM, Dannon Baker dannon.ba...@gmail.com wrote: Could you share with me a file that reproduces this behavior? I'm unable to do so on a fresh -dist clone after trying various files and file types. Do you see any errors in the console or galaxy log when this happens? I'm seeing the same behavior when using Chrome but no when using Firefox. Just in case I deleted all cookies related to galaxy in Chrome and that didn't fix the problem this time. I don't see any errors in paster.log when this happens. Regards, Carlos ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] New release : display problem
Hi there, I am using my own Galaxy instance and since I updated, I can't see file of several datatypes (for example the 'tabular' ) clicking on the eye icon. Is that a problem linked to the new release ? Cheers, Mathieu Bahin ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] New release : display problem
Mathieu, To clarify -- is this after the new galaxy-dist release, or new code in galaxy-central? And, is this *any* tabular file? Or just ones of a particular size? (Files of 50 columns are handled as a special case, for instance) -Dannon On Wed, Feb 13, 2013 at 11:29 AM, Mathieu Bahin mathieu.ba...@irisa.frwrote: Hi there, I am using my own Galaxy instance and since I updated, I can't see file of several datatypes (for example the 'tabular') clicking on the eye icon. Is that a problem linked to the new release ? Cheers, Mathieu Bahin ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
