Re: [galaxy-dev] Renaming in Workflows
Ahh, I see what's probably going on. The matching uses the tool's actual input
name (which isn't exposed, and isn't always 'input') as opposed to the label
that you'll see in the tool form and elsewhere. Which tool is this for? If
you look at the tool xml file you should see the real input name and can try
that.
On Sep 26, 2012, at 10:32 AM, Kohler Manuel wrote:
> Hi Dannon,
> thanks for the fast reply.
> I changed it to #{input}. But all the data names are still empty. Is there
> anything I am missing?
>
> BTW: I am on r7720
>
> Cheers
> Manuel
>
>
>
> On 26. September 2012 4:10 PM, "Dannon Baker" wrote:
>
>> The renaming input selector uses # instead of $ to allow combinations
>> with workflow parameters.
>>
>> So, in your case, #{input} should work. There are also options
>> (basename, upper, lower) that you can use to format the text. So,
>> #{input | upper} would use the input name but ensure that it was all
>> uppercase.
>>
>> -Dannon
>>
>> On Sep 26, 2012, at 8:23 AM, Kohler Manuel
>> wrote:
>>
>>> Hi,
>>> I have workflows where I would like to rename the item at each step. The
>>> reason for this to have a proper naming.
>>> What I did is to use the renaming option in the workflow editor. I
>>> specified the 'New output name:' to ${input}
>>> This does not work.
>>> Is there any variable which works or is there a easy way in doing this?
>>> Any help or hint is appreciated.
>>>
>>> Cheers
>>> Manuel
>>>
>>> --
>>> Manuel Kohler
>>> Center for Information Sciences and Databases (C-ISD)
>>> Department of Biosystems Science & Engineering (D-BSSE)
>>> ETH Zurich, Maulbeerstrasse (1078, 1.02), CH-4058 Basel, +41 61 387 3132
>>>
>>>
>>>
>>>
>>>
>>> ___
>>> Please keep all replies on the list by using "reply all"
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>>>
>>> http://lists.bx.psu.edu/
>>
>
>
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Re: [galaxy-dev] Renaming in Workflows
Hi Dannon,
thanks for the fast reply.
I changed it to #{input}. But all the data names are still empty. Is there
anything I am missing?
BTW: I am on r7720
Cheers
Manuel
On 26. September 2012 4:10 PM, "Dannon Baker" wrote:
>The renaming input selector uses # instead of $ to allow combinations
>with workflow parameters.
>
>So, in your case, #{input} should work. There are also options
>(basename, upper, lower) that you can use to format the text. So,
>#{input | upper} would use the input name but ensure that it was all
>uppercase.
>
>-Dannon
>
>On Sep 26, 2012, at 8:23 AM, Kohler Manuel
>wrote:
>
>> Hi,
>> I have workflows where I would like to rename the item at each step. The
>> reason for this to have a proper naming.
>> What I did is to use the renaming option in the workflow editor. I
>> specified the 'New output name:' to ${input}
>> This does not work.
>> Is there any variable which works or is there a easy way in doing this?
>> Any help or hint is appreciated.
>>
>> Cheers
>> Manuel
>>
>> --
>> Manuel Kohler
>> Center for Information Sciences and Databases (C-ISD)
>> Department of Biosystems Science & Engineering (D-BSSE)
>> ETH Zurich, Maulbeerstrasse (1078, 1.02), CH-4058 Basel, +41 61 387 3132
>>
>>
>>
>>
>>
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client. To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>
>> http://lists.bx.psu.edu/
>
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Re: [galaxy-dev] Renaming in Workflows
The renaming input selector uses # instead of $ to allow combinations with
workflow parameters.
So, in your case, #{input} should work. There are also options (basename,
upper, lower) that you can use to format the text. So, #{input | upper} would
use the input name but ensure that it was all uppercase.
-Dannon
On Sep 26, 2012, at 8:23 AM, Kohler Manuel wrote:
> Hi,
> I have workflows where I would like to rename the item at each step. The
> reason for this to have a proper naming.
> What I did is to use the renaming option in the workflow editor. I
> specified the 'New output name:' to ${input}
> This does not work.
> Is there any variable which works or is there a easy way in doing this?
> Any help or hint is appreciated.
>
> Cheers
> Manuel
>
> --
> Manuel Kohler
> Center for Information Sciences and Databases (C-ISD)
> Department of Biosystems Science & Engineering (D-BSSE)
> ETH Zurich, Maulbeerstrasse (1078, 1.02), CH-4058 Basel, +41 61 387 3132
>
>
>
>
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>
> http://lists.bx.psu.edu/
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[galaxy-dev] Renaming in Workflows
Hi,
I have workflows where I would like to rename the item at each step. The
reason for this to have a proper naming.
What I did is to use the renaming option in the workflow editor. I
specified the 'New output name:' to ${input}
This does not work.
Is there any variable which works or is there a easy way in doing this?
Any help or hint is appreciated.
Cheers
Manuel
--
Manuel Kohler
Center for Information Sciences and Databases (C-ISD)
Department of Biosystems Science & Engineering (D-BSSE)
ETH Zurich, Maulbeerstrasse (1078, 1.02), CH-4058 Basel, +41 61 387 3132
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