Re: [galaxy-dev] Schema downgraded but galaxy won't launch

2014-07-22 Thread Kandalaft, Iyad 
Thank you very much!  I had a feeling about those 119_.pyc and 120_.pyc files 
but I thought it recompiled on every launch and it would ignore them.  I don’t 
know much python

Regards,

Iyad Kandalaft
Microbial Biodiversity Bioinformatics
Agriculture and Agri-Food Canada | Agriculture et Agroalimentaire Canada
960 Carling Ave.| 960 Ave. Carling
Ottawa, ON| Ottawa (ON) K1A 0C6
E-mail Address / Adresse courriel  iyad.kandal...@agr.gc.ca
Telephone | Téléphone 613-759-1228
Facsimile | Télécopieur 613-759-1701
Teletypewriter | Téléimprimeur 613-773-2600
Government of Canada | Gouvernement du Canada



From: Dannon Baker [mailto:dannon.ba...@gmail.com]
Sent: Tuesday, July 22, 2014 11:24 AM
To: Kandalaft, Iyad
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Schema downgraded but galaxy won't launch

Hi Iyad,

`find  -name '*.pyc' -delete`

Should clean up compiled python files allowing you to run again.

-Dannon

On Tue, Jul 22, 2014 at 11:16 AM, Kandalaft, Iyad 
mailto:iyad.kandal...@agr.gc.ca>> wrote:
Hello everyone

I tried a galaxy update on my development instance of galaxy. It failed due to 
a schema change coupled with a mysql version change.  Don’t worry about why it 
failed – that has been resolved.
I have a backup copy of the database that I restored, which was based on schema 
118.  I issued a “hg update *revision*” to revert back to a code base using the 
118 schema.  I verified that the model folder now only contains up to 
118_py.  When I try to start galaxy, it tells me that the code requires 
schema 120 and that I should upgrade using db_manage.sh.  I tried running 
“db_manage.sh downgrade 118” but since the database is already v118, it just 
exists without any output. What am I doing wrong?

Regards,
Iyad Kandalaft

Bioinformatics Application Developer
Agriculture and Agri-Food Canada | Agriculture et Agroalimentaire Canada
KW Neatby Bldg | éd. KW Neatby
960 Carling Ave| 960, avenue Carling
Ottawa, ON | Ottawa (ON) K1A 0C6
E-mail Address / Adresse courriel: 
iyad.kandal...@agr.gc.ca<mailto:iyad.kandal...@agr.gc.ca>
Telephone | Téléphone 613- 759-1228
Facsimile | Télécopieur 613-759-1701
Government of Canada | Gouvernement du Canada


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Re: [galaxy-dev] Schema downgraded but galaxy won't launch

2014-07-22 Thread Dannon Baker 
Hi Iyad,

`find  -name '*.pyc' -delete`

Should clean up compiled python files allowing you to run again.

-Dannon


On Tue, Jul 22, 2014 at 11:16 AM, Kandalaft, Iyad 
wrote:

>  Hello everyone
>
>
>
> I tried a galaxy update on my development instance of galaxy. It failed
> due to a schema change coupled with a mysql version change.  Don’t worry
> about why it failed – that has been resolved.
>
> I have a backup copy of the database that I restored, which was based on
> schema 118.  I issued a “hg update **revision**” to revert back to a code
> base using the 118 schema.  I verified that the model folder now only
> contains up to 118_py.  When I try to start galaxy, it tells me that
> the code requires schema 120 and that I should upgrade using db_manage.sh.
> I tried running “db_manage.sh downgrade 118” but since the database is
> already v118, it just exists without any output. What am I doing wrong?
>
>
>
> Regards,
>
> Iyad Kandalaft
>
>
>
> Bioinformatics Application Developer
>
> Agriculture and Agri-Food Canada | Agriculture et Agroalimentaire Canada
>
> KW Neatby Bldg | éd. KW Neatby
>
> 960 Carling Ave| 960, avenue Carling
>
> Ottawa, ON | Ottawa (ON) K1A 0C6
>
> E-mail Address / Adresse courriel: iyad.kandal...@agr.gc.ca
>
> Telephone | Téléphone 613- 759-1228
>
> Facsimile | Télécopieur 613-759-1701
>
> Government of Canada | Gouvernement du Canada
>
>
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
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[galaxy-dev] Schema downgraded but galaxy won't launch

2014-07-22 Thread Kandalaft, Iyad 
Hello everyone

I tried a galaxy update on my development instance of galaxy. It failed due to 
a schema change coupled with a mysql version change.  Don't worry about why it 
failed - that has been resolved.
I have a backup copy of the database that I restored, which was based on schema 
118.  I issued a "hg update *revision*" to revert back to a code base using the 
118 schema.  I verified that the model folder now only contains up to 
118_py.  When I try to start galaxy, it tells me that the code requires 
schema 120 and that I should upgrade using db_manage.sh.  I tried running 
"db_manage.sh downgrade 118" but since the database is already v118, it just 
exists without any output. What am I doing wrong?

Regards,
Iyad Kandalaft

Bioinformatics Application Developer
Agriculture and Agri-Food Canada | Agriculture et Agroalimentaire Canada
KW Neatby Bldg | éd. KW Neatby
960 Carling Ave| 960, avenue Carling
Ottawa, ON | Ottawa (ON) K1A 0C6
E-mail Address / Adresse courriel: 
iyad.kandal...@agr.gc.ca
Telephone | Téléphone 613- 759-1228
Facsimile | Télécopieur 613-759-1701
Government of Canada | Gouvernement du Canada

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