Hi all,
This samtools dependency error is now showing for all my
Test ToolShed repositories using the samtools package:
http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats
http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad
http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler
Looking at the package itself, it looks like a ncurses (or curses)
library dependency problem - perhaps something changed on
the ToolShed server configuration?
http://testtoolshed.g2.bx.psu.edu/view/iuc/package_samtools_0_1_19
Regards,
Peter
On Wed, Apr 16, 2014 at 11:43 AM, Peter Cock wrote:
> Hi all,
>
> I'm working on a new wrapper for "samtools depad" (which I
> have been using with MIRA v4 output), now on the Test ToolShed:
>
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad
>
> The unit tests work for me locally and via TravisCI.
>
> The nightly ToolShed tests are failing - something seems to have gone
> wrong with the samtools dependency ("status Error") event though
> the samtools package is listed as a successful installation. Odd...
>
> Any thoughts?
>
> Thanks,
>
> Peter
>
> --
>
> Automated tool test results
>
>Automated test environment
>*Time tested:* 2014-04-16 05:07:24 *System:* Linux 3.8.0-30-generic
> *Architecture:* x86_64 *Python version:* 2.7.4 *Galaxy
> revision:*13078:6f698dec5895 *Galaxy
> database version:* 118 *Tool shed revision:* 13018:e20408b06d65 *Tool
> shed database version:* 22 *Tool shed mercurial version:* 2.2.3
> Installation errors
> Tool dependencies
> TypeNameVersion samtools package 0.1.19 Error This tool dependency's
> required tool dependency samtools version 0.1.19 has status Error.
> Successful installations
> Repository dependencies* - installation of these additional
> repositories is required*
> Tool shedNameOwnerChangeset revision testtoolshed.g2.bx.psu.edu
> package_samtools_0_1_19 iuc 36aa94676939
>
>
>
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