Hi all, This samtools dependency error is now showing for all my Test ToolShed repositories using the samtools package:
http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler Looking at the package itself, it looks like a ncurses (or curses) library dependency problem - perhaps something changed on the ToolShed server configuration? http://testtoolshed.g2.bx.psu.edu/view/iuc/package_samtools_0_1_19 Regards, Peter On Wed, Apr 16, 2014 at 11:43 AM, Peter Cock <[email protected]>wrote: > Hi all, > > I'm working on a new wrapper for "samtools depad" (which I > have been using with MIRA v4 output), now on the Test ToolShed: > > http://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad > > The unit tests work for me locally and via TravisCI. > > The nightly ToolShed tests are failing - something seems to have gone > wrong with the samtools dependency ("status Error") event though > the samtools package is listed as a successful installation. Odd... > > Any thoughts? > > Thanks, > > Peter > > -- > > Automated tool test results > > Automated test environment > *Time tested:* 2014-04-16 05:07:24 *System:* Linux 3.8.0-30-generic > *Architecture:* x86_64 *Python version:* 2.7.4 *Galaxy > revision:*13078:6f698dec5895 *Galaxy > database version:* 118 *Tool shed revision:* 13018:e20408b06d65 *Tool > shed database version:* 22 *Tool shed mercurial version:* 2.2.3 > Installation errors > Tool dependencies > TypeNameVersion samtools package 0.1.19 Error This tool dependency's > required tool dependency samtools version 0.1.19 has status Error. > Successful installations > Repository dependencies* - installation of these additional > repositories is required* > Tool shedNameOwnerChangeset revision testtoolshed.g2.bx.psu.edu > package_samtools_0_1_19 iuc 36aa94676939 > > >
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