I just remembered what I did for the tophat wrapper. All I did was change the
default behavior of the use coverage search option. I believe no is the
default behavior and you have it as yes.
From: Jeremy Goecks [mailto:jeremy.goe...@emory.edu]
Sent: Thursday, August 11, 2011 7:22 AM
To: Chorny,
Hi Ilya,
Thanks for the contribution; most of it has been committed in changeset
0ef81af1de09
A couple notes:
*I couldn't transplant your changes because your commit did not include recent
changes to the Cufflinks wrapper. It appears you didn't merge correctly with
the main repository at some
I made some changes to the cufflinks wrapper. I added the -g/--GTF-guide use
reference transcript annotation to guide assembly as an option. The version
number needs to still be updated in my commit.
https://bitbucket.org/ichorny/galaxy-central/changeset/fc5e24d453e5
Ilya Chorny Ph.D.
Bioinf
