Jelle,
I've added support for uploading image datatypes based on your patches in
change set 5833:e7214c69ed7d, but with some changes. There is a new
image_util.py file in ~/lib/galaxy/datatypes/util which allows for detecting
image data types without having to create a new Image() class. I've
No, data does not require a login to view if the dataset permissions
are set permissively. This allows users to share direct links to
datasets (which is meant to be a good feature ;).
On Jul 27, 2011, at 11:45 AM, Paul Gordon wrote:
On the other hand, isn't user data supposed to require a lo
On Jul 27, 2011, at 10:26 AM, Jelle Scholtalbers wrote:
Wouldn't it be better to at least validate e-mail addresses of new
users on the main instance? This would probably resolve most issues
related to unwanted content on the server?
Not in our experience, valid email addresses are trivial
On Jul 27, 2011, at 10:26 AM, Jelle Scholtalbers wrote:
Wouldn't it be better to at least validate e-mail addresses of new
users on the main instance? This would probably resolve most issues
related to unwanted content on the server?
Not in our experience, valid email addresses are trivial
On Wed, Jul 27, 2011 at 3:26 PM, Jelle Scholtalbers
wrote:
> Hi Greg,
> I do see the concern of uploading data through the api but I don't think
> filtering on file types is the right solution. It seems to be an issue with
> allowing everyone to register. Wouldn't it be better to at least validate
Hi Greg,
I do see the concern of uploading data through the api but I don't think
filtering on file types is the right solution. It seems to be an issue with
allowing everyone to register. Wouldn't it be better to at least validate
e-mail addresses of new users on the main instance? This would pro
Hi,
On Jul 27, 2011, at 3:34 PM, Peter Cock wrote:
> On Wed, Jul 27, 2011 at 2:28 PM, Greg Von Kuster wrote:
>> Helo Jelle,
>> I've taken a look at your patches and the code looks good.
>> However, I'm wondering why you find it necessary to upload image files to
>> Galaxy. Do tools exist that t
Hi Peter,
On Jul 27, 2011, at 9:34 AM, Peter Cock wrote:
> On Wed, Jul 27, 2011 at 2:28 PM, Greg Von Kuster wrote:
>> Helo Jelle,
>> I've taken a look at your patches and the code looks good.
>> However, I'm wondering why you find it necessary to upload image files to
>> Galaxy. Do tools exist
On Wed, Jul 27, 2011 at 2:28 PM, Greg Von Kuster wrote:
> Helo Jelle,
> I've taken a look at your patches and the code looks good.
> However, I'm wondering why you find it necessary to upload image files to
> Galaxy. Do tools exist that take image files as input? If the Galaxy
> community finds
Helo Jelle,
I've taken a look at your patches and the code looks good.
However, I'm wondering why you find it necessary to upload image files to
Galaxy. Do tools exist that take image files as input? If the Galaxy
community finds this feature as a good addition to Galaxy, we can probably
i
Hi Greg,
this was indeed causing the problem. I added some code which now allows to
sniff image files. It is practically untested (it does work for me on bmp,
jpg, png, tiff) - didn't try with PIL although the code is there.
Attached are diffs against changeset 058a5d7a4f84 (bit outdated - can
pro
Based on the error message you gave, I assume the following code in
~/lib/galaxy/datatypes/sniff.py is presenting the problem.
if check_binary( filename ):
if ext not in unsniffable_binary_formats and not
datatypes_registry.get_datatype_by_extension( ext ).sniff( filename ):
Hi Greg,
I used that link when trying to create the support. The jpg datatype was
already present in the datatypes_conf.xml (
)
, so I first made it available at upload -> display_in_upload=True. As far
as I understood, if galaxy doesn't have to guess what the format is, this
would be sufficien
Hello Jelle,
There are a few things you need to do to add support for a new data type. The
steps are described here:
http://wiki.g2.bx.psu.edu/Admin/Datatypes/Adding%20Datatypes
Greg Von Kuster
On Jul 22, 2011, at 8:49 AM, Jelle Scholtalbers wrote:
> Hi all,
>
> I would like to be able to u
Hi all,
I would like to be able to upload images to my Galaxy instance - in
particular jpg/png to data libraries. I can't however find out how to
overcome the problem of inappropriate content in binary file.
How to go about?
When I create a sniffer class in the galaxy.datatypes.images.py that alw
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