Hi All,
Sorry for the delay, I have had a couple of other projects on the go.
Still no good. I have made the data type unsniffable and added what I thought
was the correct information. I have also added the extension (sfx) to the list
of unsniffable binary formats in binary.py but it does not m
darren.culle...@csiro.au wrote:
> Hi All,
>
> Sorry for the delay, I have had a couple of other projects on the go.
>
> Still no good. I have made the data type unsniffable and added what I thought
> was the correct information. I have also added the extension (sfx) to the
> list of unsniffable
Hi,
Have you tried grep'ing the error message in the lib files to see where
Galaxy goes to during the upload of these files?
like: grep "/The uploaded binary file contains inappropriate content/"
`find *`
I had a similar problem when I modified Galaxy to manage .gz files
without uncompressin
Hi All,
Sorry for the delay, I have had a couple of other projects on the go.
Still no good. I have made the data type unsniffable and added what I thought
was the correct information. I have also added the extension (sfx) to the list
of unsniffable binary formats in binary.py but it does not m
Hi Darren
I assume, you have created a new data type
https://bitbucket.org/galaxy/galaxy-central/wiki/AddingDatatypes
You can now disable the 'sniffing' by adding the data type to the
following line:
unsniffable_binary_formats = [ 'ab1', 'scf' ]
in:
~/galaxy-dist/lib/galaxy/datatypes/bina
Hi
In your_galaxy_root_path/lib/galaxy/datatypes/binary.py try adding the
extension of your suffix array file type in the
unsniffable_binary_formats array.
It would be a good idea to add a class for this file type here too and
make sure the datatypes_conf.xml file refers to it.
Hope that h
Hi Everyone,
I have encountered a problem and I don't know how to fix it.
We have built a Galaxy instance on a couple of machines here and have built the
XML files to use a couple of tools in Galaxy. The input of one of these is a
Suffix Array (a binary file). Unfortunately, when I try and uplo
