Re: [galaxy-dev] Version String
On Thu, Oct 13, 2011 at 2:10 PM, Jeremy Goecks wrote: > > Shaun, > > is what you want: > > tophat --version > > A couple things to note: > *tool path isn't needed if the tool is in your galaxy user's path; > *your tool must have a --version command line option; if not, you'll > have to modify the command. > > This functionality should be working as of latest Galaxy dist. > > If you're still having trouble, it would be useful to try running a tool with > a known, functioning version command (e.g. Tophat, Bowtie, Cufflinks/ > compare/diff) and seeing if it produces the version as output. > > Let us know if you're still having problems. > > Thanks, > J. Hi all, I ran into a problem with this just now and filed an issue on it, the tag does not support an interpreter, https://bitbucket.org/galaxy/galaxy-central/issue/688/ Peter ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Version String
Shaun, is what you want: tophat --version A couple things to note: *tool path isn't needed if the tool is in your galaxy user's path; *your tool must have a --version command line option; if not, you'll have to modify the command. This functionality should be working as of latest Galaxy dist. If you're still having trouble, it would be useful to try running a tool with a known, functioning version command (e.g. Tophat, Bowtie, Cufflinks/compare/diff) and seeing if it produces the version as output. Let us know if you're still having problems. Thanks, J. On Oct 13, 2011, at 5:42 AM, SHAUN WEBB wrote: > > Hi. I am using the tag: > > path to tool --version > > In my xml file. I would expect the tool version to be printed in the > information window for each dataset but the version field is blank. I am > running the latest Galaxy dist, is there anything else I need to do? > > I have tried using also. > > Thanks > Shaun > > > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Version String
Hi. I am using the tag: path to tool --version In my xml file. I would expect the tool version to be printed in the information window for each dataset but the version field is blank. I am running the latest Galaxy dist, is there anything else I need to do? I have tried using also. Thanks Shaun -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
