Re: [galaxy-dev] Where is the eye icon for datasets in error state?
Hi Carl! Exverything is okay by now. Thanks for your support! Cheers, Sascha Original Message processed by CONSOLIDATE Subject: Re: [galaxy-dev] Where is the eye icon for datasets in error state? Sent: Mittwoch, 21. November 2012 20:06 From: Carl Eberhard (carlfeberh...@gmail.com) Sascha, As of the latest revision, the display button has been re-added for datasets in the error state. The ?edit attributes? button has been re-added for error?d datasets as well. Let me know if you see any other problems with the history panel and thanks, Carl On Wed, Nov 21, 2012 at 11:03 AM, Carl Eberhard wrote: Hi Sascha and Ted, The history panel is undergoing some major revisions and the omission of the display icon was part of that. It will be re-added today. Information from a jobs stdout and stderr are still be available using the ?i?nformation icon within each history item?s display (You?ll see a ?Show details? bit of help text when you hover your mouse over the icon; clicking on it will bring up a page with links to display both stdout and stderr). We?ll definitely consider a more extensive error dataset but it may not be feasible at the moment. Thanks, Carl On Tue, Nov 20, 2012 at 1:59 PM, Ted Goldstein wrote: Let me echo Sascha. I?ve been thinking about this problem. I suggest that we need an "Error Document" dataset type that contains two kinds information: 1. which will help the end user correct the problem (E.g. Please be sure to use MAF files not BAM files etc). 2. which will help tool developers collect a bunch of log files.. Error Documents could be aggregated (especially useful in a cluster computation). Then the report a bug button would aggregate the log file document and send it to the tool developer. Before sending, the end user would be able to see the contents and be sure that they were not posting confidential information offsite. Thanks Ted On Nov 20, 2012, at 8:02 AM, MSc. Sascha Kastens wrote: Hey devs! It seems that many things related to history datasets has changed since I have updated my local Galaxy instance and the current version. Unfortunately it seems that one cannot "Display data in browser" (eye icon) if the dataset is in error state. Where can I get that feature back? Some of my tools write logging information to a separate logfile which will be in error state if the tool fails but contain useful information. Thanks, Sascha ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Where is the eye icon for datasets in error state?
Sascha, As of the latest revision, the display button has been re-added for datasets in the error state. The 'edit attributes' button has been re-added for error'd datasets as well. Let me know if you see any other problems with the history panel and thanks, Carl On Wed, Nov 21, 2012 at 11:03 AM, Carl Eberhard wrote: > Hi Sascha and Ted, > > The history panel is undergoing some major revisions and the omission of > the display icon was part of that. It will be re-added today. > > Information from a jobs stdout and stderr are still be available using the > 'i'nformation icon within each history item's display (You'll see a 'Show > details' bit of help text when you hover your mouse over the icon; clicking > on it will bring up a page with links to display both stdout and stderr). > We'll definitely consider a more extensive error dataset but it may not be > feasible at the moment. > > Thanks, > Carl > > > On Tue, Nov 20, 2012 at 1:59 PM, Ted Goldstein wrote: > >> Let me echo Sascha. I've been thinking about this problem. I suggest >> that we need an "Error Document" dataset type that contains two kinds >> information: >> 1. which will help the end user correct the problem (E.g. Please be sure >> to use MAF files not BAM files etc). >> 2. which will help tool developers collect a bunch of log files.. >> >> Error Documents could be aggregated (especially useful in a cluster >> computation). >> >> Then the report a bug button would aggregate the log file document and >> send it to the tool developer. >> Before sending, the end user would be able to see the contents and be >> sure that they were not posting confidential information offsite. >> >> Thanks >> Ted >> >> >> >> On Nov 20, 2012, at 8:02 AM, MSc. Sascha Kastens wrote: >> >> Hey devs! >> >> >> It seems that many things related to history datasets has changed since I >> have updated my local Galaxy instance and >> the current version. >> >> >> Unfortunately it seems that one cannot "Display data in browser" (eye >> icon) if the dataset is in error state. Where can I >> get that feature back? Some of my tools write logging information to a >> separate logfile which will be in error state if >> the tool fails but contain useful information. >> >> >> Thanks, >> >> >> Sascha >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ >> >> >> >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ >> > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Where is the eye icon for datasets in error state?
Hi Sascha and Ted, The history panel is undergoing some major revisions and the omission of the display icon was part of that. It will be re-added today. Information from a jobs stdout and stderr are still be available using the 'i'nformation icon within each history item's display (You'll see a 'Show details' bit of help text when you hover your mouse over the icon; clicking on it will bring up a page with links to display both stdout and stderr). We'll definitely consider a more extensive error dataset but it may not be feasible at the moment. Thanks, Carl On Tue, Nov 20, 2012 at 1:59 PM, Ted Goldstein wrote: > Let me echo Sascha. I've been thinking about this problem. I suggest that > we need an "Error Document" dataset type that contains two kinds > information: > 1. which will help the end user correct the problem (E.g. Please be sure > to use MAF files not BAM files etc). > 2. which will help tool developers collect a bunch of log files.. > > Error Documents could be aggregated (especially useful in a cluster > computation). > > Then the report a bug button would aggregate the log file document and > send it to the tool developer. > Before sending, the end user would be able to see the contents and be > sure that they were not posting confidential information offsite. > > Thanks > Ted > > > > On Nov 20, 2012, at 8:02 AM, MSc. Sascha Kastens wrote: > > Hey devs! > > > It seems that many things related to history datasets has changed since I > have updated my local Galaxy instance and > the current version. > > > Unfortunately it seems that one cannot "Display data in browser" (eye > icon) if the dataset is in error state. Where can I > get that feature back? Some of my tools write logging information to a > separate logfile which will be in error state if > the tool fails but contain useful information. > > > Thanks, > > > Sascha > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Where is the eye icon for datasets in error state?
Let me echo Sascha. I've been thinking about this problem. I suggest that we need an "Error Document" dataset type that contains two kinds information: 1. which will help the end user correct the problem (E.g. Please be sure to use MAF files not BAM files etc). 2. which will help tool developers collect a bunch of log files.. Error Documents could be aggregated (especially useful in a cluster computation). Then the report a bug button would aggregate the log file document and send it to the tool developer. Before sending, the end user would be able to see the contents and be sure that they were not posting confidential information offsite. Thanks Ted On Nov 20, 2012, at 8:02 AM, MSc. Sascha Kastens wrote: > Hey devs! > > It seems that many things related to history datasets has changed since I > have updated my local Galaxy instance and > the current version. > > Unfortunately it seems that one cannot "Display data in browser" (eye icon) > if the dataset is in error state. Where can I > get that feature back? Some of my tools write logging information to a > separate logfile which will be in error state if > the tool fails but contain useful information. > > Thanks, > > Sascha > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Where is the eye icon for datasets in error state?
Hey devs! It seems that many things related to history datasets has changed since I have updated my local Galaxy instance and the current version. Unfortunately it seems that one cannot "Display data in browser" (eye icon) if the dataset is in error state. Where can I get that feature back? Some of my tools write logging information to a separate logfile which will be in error state if the tool fails but contain useful information. Thanks, Sascha ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
