Re: [galaxy-dev] allow users for specifying the number of CPUs
Jens, The obvious way to temporarily solve this is by adding an additional select in your tool xml having a low default core setting where users can select more cores...this is however not user specific unless you let another wrapper deal with that. This solution we use for the blast wrappers currently. Cheers Alex -Oorspronkelijk bericht- Van: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Keilwagen, Jens Verzonden: dinsdag 9 juli 2013 17:29 Aan: galaxy-...@bx.psu.edu Onderwerp: [galaxy-dev] allow users for specifying the number of CPUs Hi guys, we are currently trying to integrate CLC Bios short read assembler into our local Galaxy version. So far everything went smoothly. However, the command line tool allows for specifying the number of CPU that should be used for computation. We are wondering, whether it is also possible to enable Galaxy users also to specify the number of CPUs. Thanks for any help. Best regards, Jens ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] allow users for specifying the number of CPUs
On Tue, Jul 9, 2013 at 4:29 PM, Keilwagen, Jens wrote: > Hi guys, > > we are currently trying to integrate CLC Bios short read assembler into > our local Galaxy version. So far everything went smoothly. However, the > command line tool allows for specifying the number of CPU that should be > used for computation. We are wondering, whether it is also possible to > enable Galaxy users also to specify the number of CPUs. > > Thanks for any help. > > Best regards, Jens Not yet, but it is something the Galaxy team are looking at. For now, hard code it with a comment for future reference. Peter ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] allow users for specifying the number of CPUs
Hi guys, we are currently trying to integrate CLC Bios short read assembler into our local Galaxy version. So far everything went smoothly. However, the command line tool allows for specifying the number of CPU that should be used for computation. We are wondering, whether it is also possible to enable Galaxy users also to specify the number of CPUs. Thanks for any help. Best regards, Jens ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
