Re: [galaxy-dev] datacache & bowtie2 for mm9 ?

2013-11-07 Thread Jennifer Jackson
index files (genome).. Error: Could not find Bowtie 2 index files (/galaxy/data/mm9/mm9full/bowtie2_index/mm9full.*.bt2) *From:*Jennifer Jackson [mailto:j...@bx.psu.edu] *Sent:* Friday, September 20, 2013 4:00 PM *To:* Curtis Hendrickson (Campus) *Subject:* Re: [galaxy-dev] datacache & bowtie2

Re: [galaxy-dev] datacache & bowtie2 for mm9 ?

2013-10-29 Thread Curtis Hendrickson (Campus)
tis Hendrickson (Campus) Subject: Re: [galaxy-dev] datacache & bowtie2 for mm9 ? Thanks Curtis, I am actually working to try to get mm9 out there right now. No promises, but is just one (well, three, including variants)! If technical is a go, then will do it. Ideally others soonish. We'll s

Re: [galaxy-dev] datacache & bowtie2 for mm9 ?

2013-09-21 Thread Jennifer Jackson
Hello Curtis, The datacache was originally pointed to the data staging area and is now pointed to the data published area. The difference is that the published area contains data and location (.loc) files that are in synch and have completed final testing. It is your choice about whether to us

[galaxy-dev] datacache & bowtie2 for mm9 ?

2013-09-19 Thread Curtis Hendrickson (Campus)
Folks, First, I wanted to thank you for making the datacache available (http://wiki.galaxyproject.org/Admin/Data%20Integration; rsync://datacache.g2.bx.psu.edu). It's a great resource. However, what is the best way to stay abreast of changes to what's in datacache, and understand how these ind