Dear developers,
my Galaxy instance runs jobs under real users (DRMAA) and is going well
with small problem. external_chown script does not change owner for files
specified in inputs with .files_path suffix (i.e. directory for multiple
output files; see
Do you have an example tool XML that is not working for you? Is it
using $output.extra_files_path or $output.files_path to find this
directory? My understanding is that $output.files_path outputs should
be written to the working directory and the other version
($output.extra_files_path) should no
Hi John,
thank you for advise, you are right. The tool was using
command interpreter=bash
seqclust-main.sh -s $input -m $mvstup -o $ovstup -d $repeatmasker -v
$archive -w $contigs -y $log -x pdffile.pdf -z RMSKtable -r $__root_dir__
-t $summary -u '$summary.extra_files_path' -p $paired -f
