[galaxy-dev] Galaxy download
Hello Lizex, Are you still having problems? If so, please see below: On 10/2/12 12:34 AM, Lizex Husselmann wrote: Hi all I downloaded galaxy om my Mac OS 10.6.8 and have followed the following steps: Install Galaxy on MacBook Pro OS10.7.4 (08-10-2012) • Install Mercurial http://mercurial.selenic.com/wiki/ • Open Applications/Utilities/Terminal.app • Confirm Mercurial installation by pasting in "hg version", no quotes and hit return response = version 2.3+20120807 • Check Python version by pasting in "python -V", no quotes and hit return response = Python 2.7.1 • Go to your home directory by pasting in "cd", no quotes and hit return • Get Galaxy by pasting in "hg clone http://bitbucket.org/galaxy/galaxy-dist/";, no quotes and hit return • Go to the Galaxy directory by pasting in "cd galaxy-dist", no quotes and hit return • Start up Galaxy by pasting in "sh run.sh", no quotes and hit return • Open web browser and paste in “http://localhost:8080”, no quotes and hit return I started galaxy by pasting sh run.sh and it fetched everything and updated whats needed. I wonder if the process is actually running or if you need to do an update to incorporate changes first, then run. There is also a newer version of Mercurial (2.3.3) available, but if you are not writing tools for the Tool Shed, this should not be a factor right now. So first, double check that Galaxy is not running, then check to make sure updates are applied, then restart. The "$" in the command strings below represent the terminal prompt, they are not part of what you type. 1. Stop galaxy. With the terminal open to the process running Galaxy (or that you think is still running Galaxy) and use the two keys "Ctrl-c" together from your keyboard. 2. Change back the universe_wsgi.ini file to the default. 3. Still inside the galaxy-dist directory, type this to apply any changes: $ hg update 4. Now start up the Galaxy server: $ sh run.sh Please give this a try and let us know how it goes. I am going to move your question over to the galaxy-...@bx.psu.edu mailing list for better visibility to the development community. This is where you will want to post future questions about your local instance (and consider joining). To keep it updated, following the the News Briefs would be advised. http://wiki.g2.bx.psu.edu/Mailing%20Lists http://wiki.g2.bx.psu.edu/DevNewsBriefs Jen Galaxy team Upon pasting http://localhost:8080 in my browser GoogleChrome and Safari respectively, it didn't work. I even changed the host setting in the universe_wsgi.ini to 0.0.0.0 and still didn't open. Any suggestions? Kind regards Lizex Husselmann This message is confidential and may be covered by legal professional privilege. It must not be read, copied, disclosed or used in any other manner by any person other than the addressee(s). Unauthorised use, disclosure or copying is strictly prohibited and may be unlawful. The views expressed in this email are those of the sender, unless otherwise stated. If you have received this email in error, please contact ARC Service Desk immediately. (mailto:serviced...@arc.agric.za) To report incidents of fraud and / or corruption in the ARC use our Ethics Hotline by: Phone number : 0800 000 604 Fax number : 0800 00 7788 Email address : a...@tip-offs.com Please Call me : 32840 Website: www.tip-offs.com For more information on the ARC Ethics Hotline, please visit our website at www.arc.agric.za. ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Jennifer Jackson http://galaxyproject.org ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] galaxy download
See this page for the official installation instructions https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy 2011/5/24 Björn Grüning > Hi Jasmin, > > at first you need to install mercurial. Under debian/ubuntu install it > with: > > sudo apt-get mercurial > > Then you can check out all the necessary stuff with: > > hg clone https://bitbucket.org/galaxy/galaxy-dist > > You can start galaxy with: > > ./run.sh > > For more information, please see the wiki page. > https://bitbucket.org/galaxy/galaxy-central/wiki/Home > > Ciao, > Bjoern > > > Am Dienstag, den 24.05.2011, 08:21 +0300 schrieb jasmine jacob: > > Hi, I am a new linux user, would like to use galaxy directly on my > > computer could you instruct me how to download galaxy? > > > > thanks > > > > Jasmine Jacob-Hirsch > > Functional Genomics > > Cancer Research Center > > Sheba Medical Center > > 972-3-5302147 > > 972-523790500 > > > > > > ___ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ > > -- > Björn Grüning > Albert-Ludwigs-Universität Freiburg > Institut für Pharmazeutische Wissenschaften > Pharmazeutische Bioinformatik > Hermann-Herder-Strasse 9 > D-79104 Freiburg i. Br. > > Tel.: +49 761 203-4872 > Fax.: +49 761 203-6366 > E-Mail: bjoern.gruen...@pharmazie.uni-freiburg.de > Web: http://www.pharmaceutical-bioinformatics.org/ > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] galaxy download
Hi Jasmin, at first you need to install mercurial. Under debian/ubuntu install it with: sudo apt-get mercurial Then you can check out all the necessary stuff with: hg clone https://bitbucket.org/galaxy/galaxy-dist You can start galaxy with: ./run.sh For more information, please see the wiki page. https://bitbucket.org/galaxy/galaxy-central/wiki/Home Ciao, Bjoern Am Dienstag, den 24.05.2011, 08:21 +0300 schrieb jasmine jacob: > Hi, I am a new linux user, would like to use galaxy directly on my > computer could you instruct me how to download galaxy? > > thanks > > Jasmine Jacob-Hirsch > Functional Genomics > Cancer Research Center > Sheba Medical Center > 972-3-5302147 > 972-523790500 > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ -- Björn Grüning Albert-Ludwigs-Universität Freiburg Institut für Pharmazeutische Wissenschaften Pharmazeutische Bioinformatik Hermann-Herder-Strasse 9 D-79104 Freiburg i. Br. Tel.: +49 761 203-4872 Fax.: +49 761 203-6366 E-Mail: bjoern.gruen...@pharmazie.uni-freiburg.de Web: http://www.pharmaceutical-bioinformatics.org/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] galaxy download
Hello Jasmine, Please see http://getgalaxy.org On May 24, 2011, at 1:21 AM, jasmine jacob wrote: > Hi, I am a new linux user, would like to use galaxy directly on my computer > could you instruct me how to download galaxy? > > thanks > > Jasmine Jacob-Hirsch > Functional Genomics > Cancer Research Center > Sheba Medical Center > 972-3-5302147 > 972-523790500 > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ Greg Von Kuster Galaxy Development Team g...@bx.psu.edu ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] galaxy download
Hi, I am a new linux user, would like to use galaxy directly on my computer could you instruct me how to download galaxy? thanks Jasmine Jacob-Hirsch Functional Genomics Cancer Research Center Sheba Medical Center 972-3-5302147 972-523790500 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
