subject:"\[galaxy\-dev\] postgresql connection error\: could not connect to server\: No such file or directory..."

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

2011-06-28 Thread W. Augustine Dunn III

Thanks every one. I am in Bethesda for a conference at the moment, but I
will try your suggestions when I get back home.

Gus

Sent from my HTC EVO. Please forgive any typos and/or brevity of my reply.
On Jun 28, 2011 4:43 PM, "Nate Coraor"  wrote:
> W. Augustine Dunn III wrote:
>> Hello all:
>>
>> Please forgive me if this is a matter of RTFM but I can assure you that I
>> have in fact TRIED that for a day or so now...
>>
>> I am trying to set up a local GALAXY site for my lab so that I can start
to
>> offload some of the work that comes my way as the sole biologist in our
lab
>> not afraid of the command line. My system is Ubuntu 10.10 64b, i7 quad,
12
>> GB RAM. Since Multiple people will be using the site I decided to go with
>> the slightly more fancy postgresql db back-end rather than the sqlite
>> default. I had things running fine with the sqlite but can NOT seem to
get
>> psql and galaxy to play nice.
>>
>> I have created a galaxy role with rights to make tables on a created
>> "galaxy" database:
>>
>> galaxy@vlad 12:40:20 ~/galaxy-dist:
>> psql
>> psql (8.4.8)
>> Type "help" for help.
>>
>> galaxy=> \l
>> List of databases
>> Name | Owner | Encoding | Collation | Ctype | Access
>> privileges
>>
--+--+--+++---
>> galaxy | postgres | UTF8 | en_US.utf8 | en_US.utf8 | =Tc/postgres
>> :
>> postgres=CTc/postgres
>> :
>> galaxy=CTc/postgres
>> postgres | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
>> template0 | postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
>> :
>> postgres=CTc/postgres
>> template1 | postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
>> :
>> postgres=CTc/postgres
>> zabbix_proxy | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
>> (5 rows)
>>
>>
>>
>> I created a PGDATA file at /var/lib/postgresql/8.4/main/PGDATA and export
a
>> PGDATA envar upon loading of the galaxy user's .bashrc pointing to this
>> place. I am able to start and stop the server with the postgres user
using
>> pg_ctl. Once its running, I change users back to galaxy and try to run
>> run.sh and get the following traceback:
>>
>> Traceback (most recent call last):
> ...
>> File
>>
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/strategies.py",
>> line 80, in connect
>> raise exc.DBAPIError.instance(None, None, e)
>> OperationalError: (OperationalError) could not connect to server: No such
>> file or directory
>> Is the server running locally and accepting
>> connections on Unix domain socket "/tmp/.s.PGSQL.5432"?
>> None None
>
> Hi Gus,
>
> The version of PostgreSQL bundled with Debian and its derivatives
> (including Ubuntu) places the UNIX socket used by local processes for
> communication with PostgreSQL in /var/run/postgresql. You can instruct
> Galaxy to look here with the following database_connection string in
> universe_wsgi.ini:
>
> postgres:///galaxy?host=/var/run/postgresql
>
> Also, unless I'm missing something, it looks like your galaxy role would
> not have permissions o nthat database (perms are only assigned to the
> postgres role). The easiest fix would be to make galaxy the owner of
> the galaxy database:
>
> ALTER DATABASE galaxy OWNER TO galaxy;
>
> --nate
>
>>
>>
>> I have reached the point where I am beating my head against a wall and
>> finally decided to ask for help. I am probably not as experienced as a
pure
>> compSci person but i have been hacking python/bash/perl for years.
However
>> I am not experienced at ALL with SQL flavors.
>>
>> I hope that this give someone enough info to be able to help me! Again I
am
>> sorry if this has been addressed already. I searched the archives but
came
>> up with nothing.
>>
>> Thanks in advance!
>>
>> Gus Dunn
>>
>>
>> Molecular Biology and Biochemistry
>> Institute for Genomics and Bioinformatics
>> Major Advisor: Anthony James
>> Co-Advisor: Xiaohui Xie
>>
>> University of California, Irvine
>> 2315 McGaugh Hall
>> Irvine, CA 92697-3900
>> Lab: (949) 824-3210
>> Fax: (949) 824-8551
>> Email: du...@uci.edu
>> Email: wadun...@gmail.com
>>
>>
>> --
>> In science, "fact" can only mean "confirmed to such a degree that it
would
>> be perverse to withhold provisional assent." I suppose that apples might
>> start to rise tomorrow, but the possibility does not merit equal time in
>> physics classrooms.
>> *-Stephen Jay Gould*
>
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client. To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>
>> http://lists.bx.psu.edu/
>
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

2011-06-28 Thread Nate Coraor

W. Augustine Dunn III wrote:
> Hello all:
> 
> Please forgive me if this is a matter of RTFM but I can assure you that I
> have in fact TRIED that for a day or so now...
> 
> I am trying to set up a local GALAXY site for my lab so that I can start to
> offload some of the work that comes my way as the sole biologist in our lab
> not afraid of the command line. My system is Ubuntu 10.10 64b, i7 quad, 12
> GB RAM.  Since Multiple people will be using the site I decided to go with
> the slightly more fancy postgresql db back-end rather than the sqlite
> default.  I had things running fine with the sqlite but can NOT seem to get
> psql and galaxy to play nice.
> 
> I have created a galaxy role with rights to make tables on a created
> "galaxy" database:
> 
> galaxy@vlad 12:40:20 ~/galaxy-dist:
> psql
> psql (8.4.8)
> Type "help" for help.
> 
> galaxy=> \l
>   List of databases
>  Name |  Owner   | Encoding | Collation  |   Ctype|   Access
> privileges
> --+--+--+++---
>  galaxy   | postgres | UTF8 | en_US.utf8 | en_US.utf8 | =Tc/postgres
>   :
> postgres=CTc/postgres
>   :
> galaxy=CTc/postgres
>  postgres | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
>  template0| postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
>   :
> postgres=CTc/postgres
>  template1| postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
>   :
> postgres=CTc/postgres
>  zabbix_proxy | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
> (5 rows)
> 
> 
> 
> I created a PGDATA file at /var/lib/postgresql/8.4/main/PGDATA and export a
> PGDATA envar upon loading of the galaxy user's .bashrc pointing to this
> place.  I am able to start and stop the server with the postgres user using
> pg_ctl.  Once its running, I change users back to galaxy and try to run
> run.sh and get the following traceback:
> 
> Traceback (most recent call last):
...
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/strategies.py",
> line 80, in connect
> raise exc.DBAPIError.instance(None, None, e)
> OperationalError: (OperationalError) could not connect to server: No such
> file or directory
> Is the server running locally and accepting
> connections on Unix domain socket "/tmp/.s.PGSQL.5432"?
>  None None

Hi Gus,

The version of PostgreSQL bundled with Debian and its derivatives
(including Ubuntu) places the UNIX socket used by local processes for
communication with PostgreSQL in /var/run/postgresql.  You can instruct
Galaxy to look here with the following database_connection string in
universe_wsgi.ini:

  postgres:///galaxy?host=/var/run/postgresql

Also, unless I'm missing something, it looks like your galaxy role would
not have permissions o nthat database (perms are only assigned to the
postgres role).  The easiest fix would be to make galaxy the owner of
the galaxy database:

  ALTER DATABASE galaxy OWNER TO galaxy;

--nate

> 
> 
> I have reached the point where I am beating my head against a wall and
> finally decided to ask for help.  I am probably not as experienced as a pure
> compSci person but i have been hacking python/bash/perl for years.  However
> I am not experienced at ALL with SQL flavors.
> 
> I hope that this give someone enough info to be able to help me!  Again I am
> sorry if this has been addressed already.  I searched the archives but came
> up with nothing.
> 
> Thanks in advance!
> 
> Gus Dunn
> 
> 
> Molecular Biology and Biochemistry
> Institute for Genomics and Bioinformatics
> Major Advisor: Anthony James
> Co-Advisor: Xiaohui Xie
> 
> University of California, Irvine
> 2315 McGaugh Hall
> Irvine, CA 92697-3900
> Lab: (949) 824-3210
> Fax: (949) 824-8551
> Email: du...@uci.edu
> Email: wadun...@gmail.com
> 
> 
> -- 
> In science, "fact" can only mean "confirmed to such a degree that it would
> be perverse to withhold provisional assent." I suppose that apples might
> start to rise tomorrow, but the possibility does not merit equal time in
> physics classrooms.
> *-Stephen Jay Gould*

> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> 
>   http://lists.bx.psu.edu/

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

2011-06-28 Thread Louise-Amélie Schmitt


Hi,

Could you please show us the contents of your pg_hba.conf file? This is 
where you configure which machines can access the database through the 
network.


Best,
L-A

Le 27/06/2011 20:33, Marco Moretto a écrit :

Hi Gus,
it seems that your postgres is not configured to accept connection 
except localhost (or the deamon is not running). Did you try to 
connect to postgres from another PC in the network (no the localhost)?
Did you install postgres using apt-get install? Do you run postgres 
using  "/etc/init.d/postgresql-8.4 start"?

Greets.

---
Marco


On 24 June 2011 21:52, W. Augustine Dunn III > wrote:


Hello all:

Please forgive me if this is a matter of RTFM but I can assure you
that I have in fact TRIED that for a day or so now...

I am trying to set up a local GALAXY site for my lab so that I can
start to offload some of the work that comes my way as the sole
biologist in our lab not afraid of the command line. My system is
Ubuntu 10.10 64b, i7 quad, 12 GB RAM.  Since Multiple people will
be using the site I decided to go with the slightly more fancy
postgresql db back-end rather than the sqlite default.  I had
things running fine with the sqlite but can NOT seem to get psql
and galaxy to play nice.

I have created a galaxy role with rights to make tables on a
created "galaxy" database:

galaxy@vlad 12:40:20 ~/galaxy-dist:
psql
psql (8.4.8)
Type "help" for help.

galaxy=> \l
  List of databases
 Name |  Owner   | Encoding | Collation  |   Ctype|  
Access privileges


--+--+--+++---
 galaxy   | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
=Tc/postgres
  :
postgres=CTc/postgres
  :
galaxy=CTc/postgres
 postgres | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
 template0| postgres | UTF8 | en_US.utf8 | en_US.utf8 |
=c/postgres
  :
postgres=CTc/postgres
 template1| postgres | UTF8 | en_US.utf8 | en_US.utf8 |
=c/postgres
  :
postgres=CTc/postgres
 zabbix_proxy | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
(5 rows)



I created a PGDATA file at /var/lib/postgresql/8.4/main/PGDATA and
export a PGDATA envar upon loading of the galaxy user's .bashrc
pointing to this place.  I am able to start and stop the server
with the postgres user using pg_ctl.  Once its running, I change
users back to galaxy and try to run run.sh and get the following
traceback:

Traceback (most recent call last):
  File "/home/galaxy/galaxy-dist/lib/galaxy/web/buildapp.py", line
82, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/home/galaxy/galaxy-dist/lib/galaxy/app.py", line 32, in
__init__
create_or_verify_database( db_url, kwargs.get( 'global_conf',
{} ).get( '__file__', None ), self.config.database_engine_options )
  File
"/home/galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py", line
54, in create_or_verify_database
dataset_table = Table( "dataset", meta, autoload=True )
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/schema.py",
line 108, in __call__
return type.__call__(self, name, metadata, *args, **kwargs)
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/schema.py",
line 236, in __init__
_bind_or_error(metadata).reflecttable(self,
include_columns=include_columns)
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/base.py",
line 1261, in reflecttable
conn = self.contextual_connect()
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/threadlocal.py",
line 194, in contextual_connect
return self.session.get_connection(**kwargs)
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/threadlocal.py",
line 20, in get_connection
return self.engine.TLConnection(self,
self.engine.pool.connect(), close_with_result=close_with_result)
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 151, in connect
agent = _ConnectionFairy(self)
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 304, in __init__
rec = self._connection_record = pool.get()
  File

"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

2011-06-27 Thread Marco Moretto

Hi Gus,
it seems that your postgres is not configured to accept connection except
localhost (or the deamon is not running). Did you try to connect to postgres
from another PC in the network (no the localhost)?
Did you install postgres using apt-get install? Do you run postgres using
"/etc/init.d/postgresql-8.4 start"?
Greets.

---
Marco


On 24 June 2011 21:52, W. Augustine Dunn III  wrote:

> Hello all:
>
> Please forgive me if this is a matter of RTFM but I can assure you that I
> have in fact TRIED that for a day or so now...
>
> I am trying to set up a local GALAXY site for my lab so that I can start to
> offload some of the work that comes my way as the sole biologist in our lab
> not afraid of the command line. My system is Ubuntu 10.10 64b, i7 quad, 12
> GB RAM.  Since Multiple people will be using the site I decided to go with
> the slightly more fancy postgresql db back-end rather than the sqlite
> default.  I had things running fine with the sqlite but can NOT seem to get
> psql and galaxy to play nice.
>
> I have created a galaxy role with rights to make tables on a created
> "galaxy" database:
>
> galaxy@vlad 12:40:20 ~/galaxy-dist:
> psql
> psql (8.4.8)
> Type "help" for help.
>
> galaxy=> \l
>   List of databases
>  Name |  Owner   | Encoding | Collation  |   Ctype|   Access
> privileges
>
> --+--+--+++---
>  galaxy   | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
> =Tc/postgres
>   :
> postgres=CTc/postgres
>   :
> galaxy=CTc/postgres
>  postgres | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
>  template0| postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
>   :
> postgres=CTc/postgres
>  template1| postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
>   :
> postgres=CTc/postgres
>  zabbix_proxy | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
> (5 rows)
>
>
>
> I created a PGDATA file at /var/lib/postgresql/8.4/main/PGDATA and export a
> PGDATA envar upon loading of the galaxy user's .bashrc pointing to this
> place.  I am able to start and stop the server with the postgres user using
> pg_ctl.  Once its running, I change users back to galaxy and try to run
> run.sh and get the following traceback:
>
> Traceback (most recent call last):
>   File "/home/galaxy/galaxy-dist/lib/galaxy/web/buildapp.py", line 82, in
> app_factory
> app = UniverseApplication( global_conf = global_conf, **kwargs )
>   File "/home/galaxy/galaxy-dist/lib/galaxy/app.py", line 32, in __init__
> create_or_verify_database( db_url, kwargs.get( 'global_conf', {} ).get(
> '__file__', None ), self.config.database_engine_options )
>   File "/home/galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py", line
> 54, in create_or_verify_database
> dataset_table = Table( "dataset", meta, autoload=True )
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/schema.py",
> line 108, in __call__
> return type.__call__(self, name, metadata, *args, **kwargs)
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/schema.py",
> line 236, in __init__
> _bind_or_error(metadata).reflecttable(self,
> include_columns=include_columns)
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/base.py",
> line 1261, in reflecttable
> conn = self.contextual_connect()
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/threadlocal.py",
> line 194, in contextual_connect
> return self.session.get_connection(**kwargs)
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/threadlocal.py",
> line 20, in get_connection
> return self.engine.TLConnection(self, self.engine.pool.connect(),
> close_with_result=close_with_result)
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
> line 151, in connect
> agent = _ConnectionFairy(self)
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
> line 304, in __init__
> rec = self._connection_record = pool.get()
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
> line 161, in get
> return self.do_get()
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
> line 639, in do_get
> con = self.create_connection()
>   File
> "/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
> line 122, in create_connection
> return _ConnectionRecord(self)
>   File
> "/home/galaxy/

[galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

2011-06-24 Thread W. Augustine Dunn III

Hello all:

Please forgive me if this is a matter of RTFM but I can assure you that I
have in fact TRIED that for a day or so now...

I am trying to set up a local GALAXY site for my lab so that I can start to
offload some of the work that comes my way as the sole biologist in our lab
not afraid of the command line. My system is Ubuntu 10.10 64b, i7 quad, 12
GB RAM.  Since Multiple people will be using the site I decided to go with
the slightly more fancy postgresql db back-end rather than the sqlite
default.  I had things running fine with the sqlite but can NOT seem to get
psql and galaxy to play nice.

I have created a galaxy role with rights to make tables on a created
"galaxy" database:

galaxy@vlad 12:40:20 ~/galaxy-dist:
psql
psql (8.4.8)
Type "help" for help.

galaxy=> \l
  List of databases
 Name |  Owner   | Encoding | Collation  |   Ctype|   Access
privileges
--+--+--+++---
 galaxy   | postgres | UTF8 | en_US.utf8 | en_US.utf8 | =Tc/postgres
  :
postgres=CTc/postgres
  :
galaxy=CTc/postgres
 postgres | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
 template0| postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
  :
postgres=CTc/postgres
 template1| postgres | UTF8 | en_US.utf8 | en_US.utf8 | =c/postgres
  :
postgres=CTc/postgres
 zabbix_proxy | postgres | UTF8 | en_US.utf8 | en_US.utf8 |
(5 rows)



I created a PGDATA file at /var/lib/postgresql/8.4/main/PGDATA and export a
PGDATA envar upon loading of the galaxy user's .bashrc pointing to this
place.  I am able to start and stop the server with the postgres user using
pg_ctl.  Once its running, I change users back to galaxy and try to run
run.sh and get the following traceback:

Traceback (most recent call last):
  File "/home/galaxy/galaxy-dist/lib/galaxy/web/buildapp.py", line 82, in
app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/home/galaxy/galaxy-dist/lib/galaxy/app.py", line 32, in __init__
create_or_verify_database( db_url, kwargs.get( 'global_conf', {} ).get(
'__file__', None ), self.config.database_engine_options )
  File "/home/galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py", line
54, in create_or_verify_database
dataset_table = Table( "dataset", meta, autoload=True )
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/schema.py",
line 108, in __call__
return type.__call__(self, name, metadata, *args, **kwargs)
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/schema.py",
line 236, in __init__
_bind_or_error(metadata).reflecttable(self,
include_columns=include_columns)
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/base.py",
line 1261, in reflecttable
conn = self.contextual_connect()
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/threadlocal.py",
line 194, in contextual_connect
return self.session.get_connection(**kwargs)
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/threadlocal.py",
line 20, in get_connection
return self.engine.TLConnection(self, self.engine.pool.connect(),
close_with_result=close_with_result)
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 151, in connect
agent = _ConnectionFairy(self)
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 304, in __init__
rec = self._connection_record = pool.get()
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 161, in get
return self.do_get()
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 639, in do_get
con = self.create_connection()
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 122, in create_connection
return _ConnectionRecord(self)
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 198, in __init__
self.connection = self.__connect()
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/pool.py",
line 261, in __connect
connection = self.__pool._creator()
  File
"/home/galaxy/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.6.egg/sqlalchemy/engine/strategies.py",
line 80, in connect
raise exc.DBAPIError.instance(None, None, e)
OperationalError: (OperationalError) could not connect to server: No such
file or directory
Is the server running locally a

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

Re: [galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

[galaxy-dev] postgresql connection error: could not connect to server: No such file or directory...

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