Re: [galaxy-dev] problems in integrating tools to GALAXY

2012-08-15 Thread Hans-Rudolf Hotz
Hi Jenny Do you actually get an error message? like: "tool not found" First, try to find out what is actually not working in your script by adding some debugging comments (eg: print "wc run correctly"; etc) Next, just to get it working, provide the full path for each tool in the system com

[galaxy-dev] problems in integrating tools to GALAXY

2012-08-14 Thread Jenny
Hi, Dear all, I am trying to integrate a perl script to GALAXY, and here are the problems. I have a tool configuration xml file called abc.xml located at tools/myTools directory, which calls a perl scripts called toolExample.pl. 1 2 toolExample.pl $input $output 3 4... 5..