.bx.psu.edu
> Sent: Wednesday, May 23, 2012 2:03:18 PM
> Subject: Re: [galaxy-dev] specifying nodes/processors with PBS
> Yes, you can set these things for each tool independently.
> Check the file
> "universe_wsgi.ini"
> and check the section:
> [galaxy:tool_runner
Yes, you can set these things for each tool independently.Check the file"universe_wsgi.ini"and check the section:[galaxy:tool_runners]There you can set the -pe options for GSUB in the same way you can do on the command line...Here's an example of my setup:gatk_variant_select = drmaa://-V -pe smp 1
Hi,
I've successfully configured a local galaxy instance to submit jobs to our
local cluster, but have a question regarding setting PBS options such as the
number of nodes and processors to use. I've followed the guide here:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster?highlig
