Re: [galaxy-dev] [galaxy-user] Cleanup script error - guess_dialect_for_url

2012-03-28 Thread rocco.piazza
  Hello, I finally managed to solve this issue. To restore the cleanup scripts I had to 'update' my universe_wsgi.ini file. In the old one the use of the database_connection field was disabled in presence of the standard sqlite database and there was a database_file field pointing to dat

Re: [galaxy-dev] [galaxy-user] Cleanup script error - guess_dialect_for_url

2012-03-28 Thread Emil Bouvier
Rocco, Are you running delete_datasets.sh from the base galaxy directory or scripts/cleanup_datasets? From what I can tell, it's not finding your database configuration details in universe_wsgi.ini, which it looks for in the current directory. Dave B. On 3/27/12 3:34 AM, rocco.piazza wr

Re: [galaxy-dev] [galaxy-user] Cleanup script error - guess_dialect_for_url

2012-03-27 Thread rocco.piazza
Hello Jennifer, thank you for your support. The galaxy-dist I'm running is the March 2012 one. 'hg incoming' doesn't give any further update. Python is 2.6.5. Please, note that I can still delete datasets from the UI (if I click on the x button the dataset disappears and if I set Options->Sh

Re: [galaxy-dev] [galaxy-user] Cleanup script error - guess_dialect_for_url

2012-03-26 Thread Jennifer Jackson
Hi Rocco, To help us get oriented, which galaxy-dist pull did you start from and which did you update to? If you have the release date/hg pull numbers, that would be great. If you need to reference, these are the prior distributions: http://wiki.g2.bx.psu.edu/DevNewsBriefs Ideally, you would