On Fri, Jan 20, 2012 at 12:42 PM, Leandro Hermida
soft...@leandrohermida.com wrote:
Hello,
We've created a new binary datatype for .fastq.gz files following the
same methodology as the BAM files since we don't want our fasta.gz
files to be gunzipped. I added the appropriate code in upload.py
Hello Leandro,
I believe this behavior is due to the make_library_uploaded_dataset() method in
the ~/lib/galaxy/web/controllers/library_common controller. The current method
looks like this:
def make_library_uploaded_dataset( self, trans, cntrller, params, name,
path, type,
Hi Peter,
Sorry I wasn't clear, the .gz gets stripped from the name in the
Galaxy UI when you upload the files into a data library via the manage
data libraries form. When you upload it via Get Data - Upload File
the .gz is preserved which is what one would want since I am not
having it gunzipped
Hi Greg,
Ok this code change to library_common.py works, now when you use the
data libraries menu to bring in .fastq.gz files it doesn't cut off the
.gz thank you!
best,
Leandro
On Fri, Jan 20, 2012 at 3:32 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Leandro,
I believe this behavior is
