Dave,
The fact that the Tophat wrapper was not setting the genome based on
the alignment genome was actually a bug, but I just fixed it in
changeset 5570:0c1251f25c6b.
Let us know if you have further questions.
Regards,
Kelly
On May 17, 2011, at 10:57 AM, Dave Walton wrote:
I'd like to
I'll just chime in quickly with an agreement that FASTQ files should not have
dbkeys set. They don't yet belong to a build/reference genome version. Some
tools/workflows may currently require a FASTQ file to have the dbkey set, but
this should be considered a work-around for a defect in a tool x
