Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly?

2014-09-04 Thread Björn Grüning
view/pieterlukasse/prims_masscomb or https://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_proteomics Regards, Pieter. -----Original Message- From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-bounces@ lists.bx.psu.edu] On Behalf Of Peter Cock Sent: zaterdag 30 augustu

Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly?

2014-09-03 Thread Lukasse, Pieter
; Galaxy Dev Subject: Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly? Peter, Pieter and Dave, thank you for the pointers to your tools - they've been extremely helpful! Now I can see how the process is supposed to work. I'm not r

Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly?

2014-09-02 Thread Melissa Cline
psu.edu/view/pieterlukasse/prims_proteomics >> >> Regards, >> >> Pieter. >> >> >> -Original Message- >> From: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-bounces@ >> lists.bx.psu.edu] On Behalf Of Peter Cock >> Sent: zater

Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly?

2014-08-30 Thread Dave Bouvier
...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Peter Cock Sent: zaterdag 30 augustus 2014 4:32 To: Melissa Cline Cc: Galaxy Dev Subject: Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly? On Sat, Aug 30, 2014 at 11:17 AM

Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly?

2014-08-30 Thread Lukasse, Pieter
Behalf Of Peter Cock Sent: zaterdag 30 augustus 2014 4:32 To: Melissa Cline Cc: Galaxy Dev Subject: Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly? On Sat, Aug 30, 2014 at 11:17 AM, Melissa Cline wrote: > Hi folks, > > I'm attemp

Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that install and run JAR files properly?

2014-08-29 Thread Peter Cock
On Sat, Aug 30, 2014 at 11:17 AM, Melissa Cline wrote: > Hi folks, > > I'm attempting something that should be straightforward, but it's not. I > have a tool that runs a JAR file, which I have bundled with the tool. I > simply want to run the JAR file. And to paraphrase Thomas Edison, I've > tr