Re: [galaxy-dev] Galaxy reports crashing with the latest stable release

2014-06-04 Thread Dannon Baker
I'm having trouble reproducing this. The base grid object that's used by the SpecifiedDateListGrid does have that info_text field -- it's almost as if you're somehow using an outdated grid module, while the rendering template is current. It's a bit brute force, but can you try (from the base of

Re: [galaxy-dev] Galaxy reports

2014-03-06 Thread Martin Čech
Hello Philip, the page you are talking about should look like this: https://www.dropbox.com/s/r97zvgl8a5h1u4z/Screenshot%202014-03-06%2017.07.52.png How does yours look like? Martin On Thu, Mar 6, 2014 at 4:43 PM, Philippe Moncuquet philippe.m...@gmail.comwrote: Hi, We have recently

Re: [galaxy-dev] Galaxy reports

2014-03-06 Thread Philippe Moncuquet
Hi Martin, [image: Images intégrées 1] Cheers, Philip 2014-03-07 9:08 GMT+11:00 Martin Čech mar...@bx.psu.edu: Hello Philip, the page you are talking about should look like this: https://www.dropbox.com/s/r97zvgl8a5h1u4z/Screenshot%202014-03-06%2017.07.52.png How does yours look like?

Re: [galaxy-dev] Galaxy reports

2014-03-06 Thread Steve.Mcmahon
: [galaxy-dev] Galaxy reports Hello Philip, the page you are talking about should look like this: https://www.dropbox.com/s/r97zvgl8a5h1u4z/Screenshot%202014-03-06%2017.07.52.png How does yours look like? Martin On Thu, Mar 6, 2014 at 4:43 PM, Philippe Moncuquet philippe.m

Re: [galaxy-dev] Galaxy reports

2014-03-06 Thread Martin Čech
-boun...@lists.bx.psu.edu] *On Behalf Of *Martin Cech *Sent:* Friday, 7 March 2014 9:09 AM *To:* Philippe Moncuquet *Cc:* galaxy-dev@lists.bx.psu.edu *Subject:* Re: [galaxy-dev] Galaxy reports Hello Philip, the page you are talking about should look like this: https://www.dropbox.com/s

Re: [galaxy-dev] Galaxy Reports link - registed users per month - does not work

2014-01-17 Thread Hans-Rudolf Hotz
Hi Liisa This rings a bell I assume you use a MYSQL database? and I guess other pages are broken as well? We are also using MySQL and I had to fix several lines in several files in order to get all report pages to work. To do the fixes, have a look at this old (but still valid)

Re: [galaxy-dev] Galaxy Reports

2014-01-17 Thread Eric Rasche
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Well! This is the first I've heard of a Galaxy Reports page. Too bad I already re-invented the wheel because I hadn't ever heard of this tool... Anyway, since run_reports.sh was only mentioned once anywhere in the wiki (according to search, in a

Re: [galaxy-dev] Galaxy Reports

2014-01-17 Thread Martin Čech
Thank you Eric for the wiki page. I agree that Galaxy Reports are not visible enough and this might help. Martin, Galaxy Team On Fri, Jan 17, 2014 at 12:29 PM, Eric Rasche rasche.e...@yandex.ru wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Well! This is the first I've heard of a

Re: [galaxy-dev] Galaxy Reports: 'unfinished jobs' seems not to do the job

2013-03-07 Thread Hans-Rudolf Hotz
Hi Joachim I make increasingly use of the Galaxy Reports tool. Until recently I started it and shut it down again. Now I run it continuously. I have noticed that a lot of the jobs listed in 'unfinished jobs' are actually finished. Any hint on how to clean up the database? Which table?

Re: [galaxy-dev] Galaxy Reports: 'unfinished jobs' seems not to do the job

2013-03-07 Thread Joachim Jacob | VIB |
Hi Hans, OK, thanks: diving into the job table. Your question: why you consider the job as being finished, and Galaxy thinks the job is still running is the core issue that I need to find out. None of those jobs have entries in the ps list. Currently, I think that those jobs are still

Re: [galaxy-dev] Galaxy Reports no longer functions

2012-08-20 Thread Hans-Rudolf Hotz
Hi Iry The last but one line: socket.error: [Errno 98] Address already in use holds probably the clue. Looks like something else is running on the same port or you didn't stop the reports server before restarting it (after the upgrade) Regards, Hans On 08/17/2012 11:08 PM, Iry Witham