Re: [galaxy-dev] Refreshing/Reloading Files
Hi Paul
Please keep all replies on the list by using "reply all"
A simple solution, which we use quite a lot, is the following:
we use the "dynamic_options" attribute, eg:
and then we have a little python script ("extra_code_for_foo_list.py")
with the "ds_fooOptions" function, which can read your file (ie your
list of databases), eg
def ds_fooOptions():
"""List available foos as tuples of (displayName,value)"""
foos =
return foos
I hope this helps, Hans
On 06/29/2011 08:09 PM, Admins de Galaxy wrote:
Hi Hans,
yes that's it. We are offering the list of databases as options to select in
the GUI,
before executing the script which compares the selected database with the
sequence.
Paul
2011/6/29 Hans-Rudolf Hotz
Hi Paul
You probably need to be a bit more specific...at what stage is this '.txt
file' read (or rather should be read)? - are you offering the (growing) list
of databases as options to select in the GUI?
Hans
On 06/29/2011 10:20 AM, Admins de Galaxy wrote:
Hello everyone,
we have a problem with one of our selfwritten tools.
We have a tool, that compares sequence with a database.
The List of the available databases is loaded from a .txt file.
One of our other tools, manages that a new database is
added to the .txt file. But Galaxy doesn't recognize the change.
It would be nice if someone could give us an advice.
Best regards
Paul K. Deuster
@ Technische Hochschule Mittelhessen
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Re: [galaxy-dev] Refreshing/Reloading Files
Hi Paul You probably need to be a bit more specific...at what stage is this '.txt file' read (or rather should be read)? - are you offering the (growing) list of databases as options to select in the GUI? Hans On 06/29/2011 10:20 AM, Admins de Galaxy wrote: Hello everyone, we have a problem with one of our selfwritten tools. We have a tool, that compares sequence with a database. The List of the available databases is loaded from a .txt file. One of our other tools, manages that a new database is added to the .txt file. But Galaxy doesn't recognize the change. It would be nice if someone could give us an advice. Best regards Paul K. Deuster @ Technische Hochschule Mittelhessen ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Refreshing/Reloading Files
Paul, as far as I know the config files (probably loc files) are only refreshed on galaxy_instance restart unfortunatly. So when this is possible to do on the fly I am interested as well. Alex Van: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] namens Admins de Galaxy [galaxy.at.thm@googlemail.com] Verzonden: woensdag 29 juni 2011 10:20 Aan: galaxy-...@bx.psu.edu Onderwerp: [galaxy-dev] Refreshing/Reloading Files Hello everyone, we have a problem with one of our selfwritten tools. We have a tool, that compares sequence with a database. The List of the available databases is loaded from a .txt file. One of our other tools, manages that a new database is added to the .txt file. But Galaxy doesn't recognize the change. It would be nice if someone could give us an advice. Best regards Paul K. Deuster @ Technische Hochschule Mittelhessen ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
