Re: [galaxy-dev] Tools won't go away even after deleting it from tool_conf.xml

2012-09-06 Thread Hans-Rudolf Hotz


moving to galaxy-dev


this is probably related to this issue:

http://dev.list.galaxyproject.org/problems-with-labels-in-the-tool-box-and-order-of-the-tools-td4655985.html

Hence, try deleting integrated_tool_panel.xml first before you do a 
restart.


Regards, Hans

On 09/06/2012 01:29 PM, Makis Ladoukakis wrote:

Dear Galaxy users,

Has anyone experienced this problem before? In my local instance of
Galaxy on a server I've deleted the path of almost all sections with
their corresponding tools from tool_conf.xml (wanting to leave my own
customized section) but after a restart and a new run of the run.sh
there are still two of them (SNP/WGA: Data; Filters andPhenotype
Association) left in the tool list with their first tool also appearing.
Is there a special setting for those two? Can anyone help me?

Thank you,
Efthymios Ladoukakis


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Re: [galaxy-dev] Tools won't go away even after deleting it from tool_conf.xml

2012-09-06 Thread Makis Ladoukakis

Dear Hans,

Thank you for your help. Unfortunately after deleting the file and restarting 
one of them still remains. Is there anything more I could do?

Regards,
Efthymios Ladoukakis

 Date: Thu, 6 Sep 2012 14:25:11 +0200
 From: h...@fmi.ch
 To: makis4e...@hotmail.com
 CC: galaxy-u...@lists.bx.psu.edu; galaxy-...@bx.psu.edu
 Subject: Re: Tools won't go away even after deleting it from tool_conf.xml
 
 
 moving to galaxy-dev
 
 
 this is probably related to this issue:
 
 http://dev.list.galaxyproject.org/problems-with-labels-in-the-tool-box-and-order-of-the-tools-td4655985.html
 
 Hence, try deleting integrated_tool_panel.xml first before you do a 
 restart.
 
 Regards, Hans
 
 On 09/06/2012 01:29 PM, Makis Ladoukakis wrote:
  Dear Galaxy users,
 
  Has anyone experienced this problem before? In my local instance of
  Galaxy on a server I've deleted the path of almost all sections with
  their corresponding tools from tool_conf.xml (wanting to leave my own
  customized section) but after a restart and a new run of the run.sh
  there are still two of them (SNP/WGA: Data; Filters andPhenotype
  Association) left in the tool list with their first tool also appearing.
  Is there a special setting for those two? Can anyone help me?
 
  Thank you,
  Efthymios Ladoukakis
 
 
  ___
  The Galaxy User list should be used for the discussion of
  Galaxy analysis and other features on the public server
  at usegalaxy.org.  Please keep all replies on the list by
  using reply all in your mail client.  For discussion of
  local Galaxy instances and the Galaxy source code, please
  use the Galaxy Development list:
 
 http://lists.bx.psu.edu/listinfo/galaxy-dev
 
  To manage your subscriptions to this and other Galaxy lists,
  please use the interface at:
 
 http://lists.bx.psu.edu/
 
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Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/