Re: [galaxy-dev] Trouble getting setting dbkey of output data

[Chorny, Ilya]

Great, thanks!!!

From: Daniel Blankenberg [mailto:d...@bx.psu.edu]
Sent: Tuesday, October 18, 2011 10:24 AM
To: Chorny, Ilya
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Trouble getting setting dbkey of output data

Hi Ilya,

The 'actions' tagset must be within the ''data' tagset, you have it outside. 
Try something like:


  
   
 


 
   
  



Please let us know if we can provide additional assistance.

Thanks for using Galaxy,

Dan


On Oct 18, 2011, at 12:29 PM, Chorny, Ilya wrote:


Anybody, anybody?

Thanks,

Ilya


From: 
galaxy-dev-boun...@lists.bx.psu.edu<mailto:galaxy-dev-boun...@lists.bx.psu.edu> 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu]<mailto:[mailto:galaxy-dev-boun...@lists.bx.psu.edu]>
 On Behalf Of Chorny, Ilya
Sent: Monday, October 17, 2011 9:31 AM
To: galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu>
Subject: [galaxy-dev] Trouble getting setting dbkey of output data

I am having trouble setting the dbkey of an output data set. The input and 
output, respectively, is shown below. I copied this from the bowtie_wrapper.xml 
 but the difference is that I do not have a condition on selecting the 
reference genome. My tool requires a .loc file. The tools completes correctly 
but the dbkey is not set. Any thoughts on what I may be doing wrong?

Thanks,

Ilya



   
  
  
   



  
   
 


 
   
  

Ilya Chorny Ph.D.
Bioinformatics Scientist I
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Work: 858.202.4582
Email: icho...@illumina.com<mailto:icho...@illumina.com>
Website: www.illumina.com<http://www.illumina.com>


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Re: [galaxy-dev] Trouble getting setting dbkey of output data

[Daniel Blankenberg]

Hi Ilya,

The 'actions' tagset must be within the ''data' tagset, you have it outside. 
Try something like:


  
   
 


 
   
  



Please let us know if we can provide additional assistance.

Thanks for using Galaxy,

Dan


On Oct 18, 2011, at 12:29 PM, Chorny, Ilya wrote:

> Anybody, anybody?
>  
> Thanks,
>  
> Ilya
>  
>  
> From: galaxy-dev-boun...@lists.bx.psu.edu 
> [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
> Sent: Monday, October 17, 2011 9:31 AM
> To: galaxy-dev@lists.bx.psu.edu
> Subject: [galaxy-dev] Trouble getting setting dbkey of output data
>  
> I am having trouble setting the dbkey of an output data set. The input and 
> output, respectively, is shown below. I copied this from the 
> bowtie_wrapper.xml  but the difference is that I do not have a condition on 
> selecting the reference genome. My tool requires a .loc file. The tools 
> completes correctly but the dbkey is not set. Any thoughts on what I may be 
> doing wrong?
>  
> Thanks,
>  
> Ilya
>  
>  
> 
>
>   
>   
>
> 
>  
> 
>   
>
>   offset="0">
>  compare="startswith" keep="False"/>
> 
>  
>
>   
>  
> Ilya Chorny Ph.D.
> Bioinformatics Scientist I
> Illumina, Inc.
> 9885 Towne Centre Drive
> San Diego, CA 92121
> Work: 858.202.4582
> Email: icho...@illumina.com
> Website: www.illumina.com
>  
>  
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> 
>  http://lists.bx.psu.edu/

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Re: [galaxy-dev] Trouble getting setting dbkey of output data

[Chorny, Ilya]

Anybody, anybody?

Thanks,

Ilya


From: galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
Sent: Monday, October 17, 2011 9:31 AM
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] Trouble getting setting dbkey of output data

I am having trouble setting the dbkey of an output data set. The input and 
output, respectively, is shown below. I copied this from the bowtie_wrapper.xml 
 but the difference is that I do not have a condition on selecting the 
reference genome. My tool requires a .loc file. The tools completes correctly 
but the dbkey is not set. Any thoughts on what I may be doing wrong?

Thanks,

Ilya



   
  
  
   



  
   
 


 
   
  

Ilya Chorny Ph.D.
Bioinformatics Scientist I
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Work: 858.202.4582
Email: icho...@illumina.com
Website: www.illumina.com


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