Collection are one potential answer for how users can specify the set
of stuff that belongs in the directory. For explicitly dealing with
applications that consume directories - I think it is best to just
create the directory and link in files (if possible) before the tool
runs.
mkdir input_dir;
#
You might be able to do this by accepting a collection of
SAM/BAM files as input instead. This is a quite new feature
in Galaxy, see:
https://wiki.galaxyproject.org/News/2014_06_02_Galaxy_Distribution
Peter
On Wed, Sep 3, 2014 at 10:00 AM, Philippe Moncuquet
wrote:
> Hi,
>
> I am trying to writ
