Re: [galaxy-dev] Downloading large files from local galaxy
Hi Dan, This solution you provided took care of the downloading issue. Thanks! - Roy On Wed, Oct 5, 2011 at 2:41 PM, Daniel Blankenberg wrote: > Hi Roy, > > Have you tried setting debug=False and use_interactive=False in the > universe_wsgi.ini file? > > > Thanks for using Galaxy, > > Dan > > > On Oct 5, 2011, at 2:32 PM, Glen Beane wrote: > > > > > On Oct 5, 2011, at 2:25 PM, Roy Weckiewicz wrote: > > > >> Hi, > >> > >> > >> We have a local galaxy instance running on mac osx connected to a mysql > database. We are having an issue downloading files which are > 2Gb. I've > read posts on this mailing list that mention that there is a browser limit > on downloading files of this size, which is fine > > > > I believe the 2GB limit is for uploading through a browser, not > downloading. I have downloaded files larger than 2GB through a web browser > from our local Galaxy instance a number of times, although I do remember a > long time ago (around a year ago) we had similar trouble with our local > instance -- unfortunately I do not remember how we resolved it. > > > > > > -- > > Glen L. Beane > > Senior Software Engineer > > The Jackson Laboratory > > (207) 288-6153 > > > > > > ___ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ > > -- Roy Weckiewicz Texas A&M University ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Downloading large files from local galaxy
Hi Roy, Have you tried setting debug=False and use_interactive=False in the universe_wsgi.ini file? Thanks for using Galaxy, Dan On Oct 5, 2011, at 2:32 PM, Glen Beane wrote: > > On Oct 5, 2011, at 2:25 PM, Roy Weckiewicz wrote: > >> Hi, >> >> >> We have a local galaxy instance running on mac osx connected to a mysql >> database. We are having an issue downloading files which are > 2Gb. I've >> read posts on this mailing list that mention that there is a browser limit >> on downloading files of this size, which is fine > > I believe the 2GB limit is for uploading through a browser, not downloading. > I have downloaded files larger than 2GB through a web browser from our local > Galaxy instance a number of times, although I do remember a long time ago > (around a year ago) we had similar trouble with our local instance -- > unfortunately I do not remember how we resolved it. > > > -- > Glen L. Beane > Senior Software Engineer > The Jackson Laboratory > (207) 288-6153 > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Downloading large files from local galaxy
On Oct 5, 2011, at 2:25 PM, Roy Weckiewicz wrote: > Hi, > > > We have a local galaxy instance running on mac osx connected to a mysql > database. We are having an issue downloading files which are > 2Gb. I've read > posts on this mailing list that mention that there is a browser limit on > downloading files of this size, which is fine I believe the 2GB limit is for uploading through a browser, not downloading. I have downloaded files larger than 2GB through a web browser from our local Galaxy instance a number of times, although I do remember a long time ago (around a year ago) we had similar trouble with our local instance -- unfortunately I do not remember how we resolved it. -- Glen L. Beane Senior Software Engineer The Jackson Laboratory (207) 288-6153 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] downloading large files
okay, thanks. i'll create a tool to export files as a tarball in the user's ftp folder, and couple it with a cron job to make sure the files are deleted after a week. i'll contribute it to the toolshed when done. On Fri, Aug 26, 2011 at 11:59 AM, Nate Coraor wrote: > Edward Kirton wrote: >> i thought i recalled reading about downloading files from a history >> via ftp, but i could been mistaken -- couldn't find anything on the >> wiki or mailing list archives. does this feature exist? >> >> what's the best way for users to download many or large files other >> than via the browser? > > You can use wget/curl to avoid the browser, but it's still an http > transfer. Some people have written an "export" tool that writes a > dataset to some specified location. We've talked before about adding > this sort of functionality directly into the interface but it hasn't > been done yet. > > --nate > >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] downloading large files
Edward Kirton wrote: > i thought i recalled reading about downloading files from a history > via ftp, but i could been mistaken -- couldn't find anything on the > wiki or mailing list archives. does this feature exist? > > what's the best way for users to download many or large files other > than via the browser? You can use wget/curl to avoid the browser, but it's still an http transfer. Some people have written an "export" tool that writes a dataset to some specified location. We've talked before about adding this sort of functionality directly into the interface but it hasn't been done yet. --nate > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
