Re: [galaxy-dev] galaxy is not sourcing tool environment

2014-06-05 Thread Björn Grüning
Hi Isabelle, can you show us the requirements section from your tool? Also you need to have a symbolic link from tool_dependency_dir/hhsuite/2.0.16/ ponting to tool_dependency_dir/hhsuite/default/ In tool_dependency_dir/hhsuite/default/ should be the env.sh file. If you have the correct

Re: [galaxy-dev] galaxy is not sourcing tool environment

2014-06-05 Thread Isabelle Phan
aahh, that must be it, thanks Bjoern! I have the symbolic link, but I did not have the 'requirements' section correct. thanks so much for your help, Isabelle On 6/5/14 9:27 AM, Björn Grüning bjoern.gruen...@gmail.com wrote: Hi Isabelle, can you show us the requirements section from your