Re: [galaxy-dev] gene annotation file (gtf)

[Hans-Rudolf Hotz]

On 04/04/2013 04:38 PM, Hagai Cohen wrote:

That's a great idea.
I have used data libraries from the api.
Can I set a data library file as the input for a tool using the browser?



Yes, but you first need to import the dataset into your current history.
(Shared Data -> Data Libraries -> and select your data...)

Hans-Rudolf


Hagai


On Thu, Apr 4, 2013 at 5:31 PM, Hans-Rudolf Hotz mailto:h...@fmi.ch>> wrote:



On 04/04/2013 04:10 PM, Hagai Cohen wrote:

Hi,
Is is possible to configure gene annotation file files inside
galaxy per
genome internally?
As in bowtie indices or something similiar.
I don't want to upload the ucsc constant gtf files on each history I
need them.


Have you considered creating a data library?
(http://wiki.galaxyproject.__org/Admin/DataLibraries/__Libraries
)

you can the re-use the data without downloading again and without
duplicating.

Regards, Hans-Rudolf



Thanks for the help,
Hagai



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Re: [galaxy-dev] gene annotation file (gtf)

[Hagai Cohen]

That's a great idea.
I have used data libraries from the api.
Can I set a data library file as the input for a tool using the browser?

Hagai


On Thu, Apr 4, 2013 at 5:31 PM, Hans-Rudolf Hotz  wrote:

>
>
> On 04/04/2013 04:10 PM, Hagai Cohen wrote:
>
>> Hi,
>> Is is possible to configure gene annotation file files inside galaxy per
>> genome internally?
>> As in bowtie indices or something similiar.
>> I don't want to upload the ucsc constant gtf files on each history I
>> need them.
>>
>>
> Have you considered creating a data library? (http://wiki.galaxyproject.**
> org/Admin/DataLibraries/**Libraries
> )
>
> you can the re-use the data without downloading again and without
> duplicating.
>
> Regards, Hans-Rudolf
>
>
>
>  Thanks for the help,
>> Hagai
>>
>>
>>
>> __**_
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>http://lists.bx.psu.edu/
>>
>> To search Galaxy mailing lists use the unified search at:
>>
>> http://galaxyproject.org/**search/mailinglists/
>>
>>
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Re: [galaxy-dev] gene annotation file (gtf)

[Hans-Rudolf Hotz]

On 04/04/2013 04:10 PM, Hagai Cohen wrote:

Hi,
Is is possible to configure gene annotation file files inside galaxy per
genome internally?
As in bowtie indices or something similiar.
I don't want to upload the ucsc constant gtf files on each history I
need them.



Have you considered creating a data library? 
(http://wiki.galaxyproject.org/Admin/DataLibraries/Libraries)


you can the re-use the data without downloading again and without 
duplicating.


Regards, Hans-Rudolf




Thanks for the help,
Hagai



___
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