Re: [galaxy-dev] location of .loc-files/data tables -- bug or feature?

[Christian Hundsrucker]

Hey Dannon,

thnx for the info and the quick reply!

On 21.05.2013 18:09, Dannon Baker wrote:

Hey Christian,

This is a bug that surfaced in revision 8333 which should be fixed 
in 9326:d07c62f0067a, which is available in the most recent 
galaxy-dist (stable branch).  If you'd rather not update right away, 
we'll have another full-fledged dist release out soon.


-Dannon


On Tue, May 21, 2013 at 5:48 AM, Christian Hundsrucker 
mailto:christian.hundsruc...@ur.de>> wrote:


Hello, Galaxy developers!

I do a bit of tweaking to a local galaxy instance. Thus, I just
realized that subdirectories are not supported for the location of
.loc-files/data tables.
E.g. tool-data/somesub/my.loc is not recognized even if this
location is correctly linked in the tool_data_table_conf.xml
().
Via the Galaxy-Admin interface and 'Server', 'View data tables
registry' the .loc file is marked as a "Missing index file" - in
the example the displayed location would be  "tool-data/my.loc"
(without the 'somesub' subdirectory). As soon as I store 'my.loc'
directly in the tool-data directory galaxy runs smoothly again,
even (!) if I keep the subdirectory in the file path in
tool_data_table_conf.xml.

Is galaxy meant to behave like this? If so, a word about it in the
documentation would be really helpful!

Best,
Christian

version:
changeset:   8796:961ae35ba612
branch:  stable
tag: tip
parent:  8794:1c7174911392
user:Nate Coraor mailto:n...@bx.psu.edu>>
date:Fri Feb 08 11:23:04 2013 -0500

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Re: [galaxy-dev] location of .loc-files/data tables -- bug or feature?

[Dannon Baker]

Hey Christian,

This is a bug that surfaced in revision 8333 which should be fixed
in 9326:d07c62f0067a, which is available in the most recent galaxy-dist
(stable branch).  If you'd rather not update right away, we'll have another
full-fledged dist release out soon.

-Dannon


On Tue, May 21, 2013 at 5:48 AM, Christian Hundsrucker <
christian.hundsruc...@ur.de> wrote:

> Hello, Galaxy developers!
>
> I do a bit of tweaking to a local galaxy instance. Thus, I just realized
> that subdirectories are not supported for the location of .loc-files/data
> tables.
> E.g. tool-data/somesub/my.loc is not recognized even if this location is
> correctly linked in the tool_data_table_conf.xml ( path="tool-data/somesub/my.**loc" />).
> Via the Galaxy-Admin interface and 'Server', 'View data tables registry'
> the .loc file is marked as a "Missing index file" - in the example the
> displayed location would be  "tool-data/my.loc" (without the 'somesub'
> subdirectory). As soon as I store 'my.loc' directly in the tool-data
> directory galaxy runs smoothly again, even (!) if I keep the subdirectory
> in the file path in tool_data_table_conf.xml.
>
> Is galaxy meant to behave like this? If so, a word about it in the
> documentation would be really helpful!
>
> Best,
> Christian
>
> version:
> changeset:   8796:961ae35ba612
> branch:  stable
> tag: tip
> parent:  8794:1c7174911392
> user:Nate Coraor 
> date:Fri Feb 08 11:23:04 2013 -0500
>
> __**_
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>  http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>  
> http://galaxyproject.org/**search/mailinglists/
>
___
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