Re: [galaxy-dev] new data type.

[Luobin Yang]

Hi, Hans,

Thanks for the link. I figured out the problem.  It turned out the data type
nexus was registered twice in the datatypes_conf.xml and the second one was
not using the right type.

THanks,
Luobin

On Fri, Jul 22, 2011 at 1:19 AM, Hans-Rudolf Hotz  wrote:

> Hi Luobin
>
> It is difficult to guess without seeing your code.
>
> So, assuming you followed the steps described in the wiki (
> http://wiki.g2.bx.psu.edu/**Admin/Datatypes/Adding%**20Datatypes),
> I guess you just made a typo somewhere (since this has happen to me several
> times when adding a new datatype). Have you double checked your tool
> definition file?
>
>
> Regards, Hans
>
>
>
> On 07/22/2011 07:52 AM, Luobin Yang wrote:
>
>> Hi,
>>
>> I created an XML file for a tool. This tool has an Nexus input. When I
>> click
>> the input field of the web interface for this tool, it shows all kinds of
>> data that I can select. How do I restrict the list to show only data in
>> nexus format? I added a line in the registration part and the sniffer part
>> of the datatypes_conf.xml and I also created a class called Nexus which
>> inherits the class galaxy.datatypes.Sequence, but this doesn't solve the
>> problem.
>>
>> Thanks,
>> Luobin
>>
>>
>>
>>
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Re: [galaxy-dev] new data type.

[Hans-Rudolf Hotz]

Hi Luobin

It is difficult to guess without seeing your code.

So, assuming you followed the steps described in the wiki 
(http://wiki.g2.bx.psu.edu/Admin/Datatypes/Adding%20Datatypes), I guess 
you just made a typo somewhere (since this has happen to me several 
times when adding a new datatype). Have you double checked your tool 
definition file?



Regards, Hans


On 07/22/2011 07:52 AM, Luobin Yang wrote:

Hi,

I created an XML file for a tool. This tool has an Nexus input. When I click
the input field of the web interface for this tool, it shows all kinds of
data that I can select. How do I restrict the list to show only data in
nexus format? I added a line in the registration part and the sniffer part
of the datatypes_conf.xml and I also created a class called Nexus which
inherits the class galaxy.datatypes.Sequence, but this doesn't solve the
problem.

Thanks,
Luobin




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