Thank you for prompt reply. Yes I have deleted many datasets through history
panel but the history itself is exist.
Date: Wed, 23 Apr 2014 09:35:19 -0400
Subject: Re: [galaxy-dev] purging deleted datasets
From: dannon.ba...@gmail.com
To: mi.bast...@live.com
CC: galaxy-dev@lists.bx.psu.edu
Hi Milad,
That's just a warning, it should not cause any issues (I've just confirmed this
locally on a sqlite instance). So you're sure you have histories with deleted
datasets older than 0 days? The commands you have run will not remove datasets
that haven't been deleted first by a user (usually through the history panel).
-Dannon
On Wed, Apr 23, 2014 at 9:21 AM, Milad Bastami wrote:
Dear all,I have some unwanted datasets to remove but I need their main
histories, so in galaxy I just deleted the unwanted datasets but not the
histories. Then I tried to purge the deleted datasets with the following
commands:
python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d 0 -6
-r python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d 0
-3 -r
and I saw the this error:
/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.7-linux-x86_64-ucs4.egg/sqlalchemy/types.py:215:
SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects
natively, and SQLAlchemy must convert from floating point - rounding errors and
other issues may occur. Please consider storing Decimal numbers as strings or
integers on this platform for lossless storage.
Purged 0 datasetsFreed disk space: 0Elapsed time: 0.0748069286346
Unfortunately I can't understand the warning and why nothing was deleted. Any
help would be most appreciated.
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