While I've got you on the line, do you know why enabling the real user method
blanks out the jobName for the PBS job? The jobName is set if the jobs are
submitted as the Galaxy user.
David
On Oct 3, 2012, at 11:03 AM, Nate Coraor wrote:
> On Oct 3, 2012, at 10:06 AM, David Hoover wrote:
>
>>
On Oct 3, 2012, at 10:06 AM, David Hoover wrote:
>
>> This script is used multiple times, so you might want to make sure that this
>> change won't cause files to become readable that you would prefer remain
>> unreadable.
>
> From the log output, it looks like files are chmod'd to the user, th
> This script is used multiple times, so you might want to make sure that this
> change won't cause files to become readable that you would prefer remain
> unreadable.
>From the log output, it looks like files are chmod'd to the user, then later
>back to the Galaxy user. Is there somewhere el
you mention Apache uploading, what are you using for Apache to handle the
uploads?
--nate
>
> David
>
> Begin forwarded message:
>
>> From: David Hoover
>> Date: October 2, 2012 1:21:02 PM EDT
>> To: Oleksandr Moskalenko
>> Cc: galaxy-dev@lists.bx.psu.ed
No, that's not it. The galaxy user, as well as all other users, have umask 022
by default.
I believe the problem is with Apache uploading. I can't figure out how to
reconfigure Apache to set the permissions they way I want them.
David
On Oct 2, 2012, at 1:17 PM, Oleksandr Moskalenko wrote:
