Re: [galaxy-dev] galaxy with torque

2014-12-05 Thread Fernandez Edgar
Hello Nate, Thank you for this explanation, this clears up a lot and I have a better understanding of how galaxy works. I still have some points that I would like more clarifications: 1. What are the purpose of the 4 variables defined under my [server:handler0] section in the file config

[galaxy-dev] tool with conditional parameter broken on release 2014.08.11

2014-12-05 Thread Anne Pajon
Dear, I am looking for help after updating our Galaxy production server to release 2014.08.11, one of our in-house tool does not load in Galaxy anymore. I do think the problem is related to the conditional parameter because when I comment this section out Galaxy does display it. Any ideas where

Re: [galaxy-dev] galaxy with torque

2014-12-05 Thread Nate Coraor
On Fri, Dec 5, 2014 at 9:13 AM, Fernandez Edgar < edgar.fernan...@umontreal.ca> wrote: > Hello Nate, > > > > Thank you for this explanation, this clears up a lot and I have a better > understanding of how galaxy works. > > I still have some points that I would like more clarifications: > > > > 1.

Re: [galaxy-dev] galaxy with torque

2014-12-05 Thread Fernandez Edgar
Hello again Nate, I’ve uninstalled and reinstalled a fresh package of galaxy and torque. I’ve also configure, make and install pbs_drmaa. Finally, when I start galaxy, the main works but the handler0 doesn’t. Here is the error: galaxy.jobs.manager DEBUG 2014-12-05 13:12:10,035 Starting job handle

Re: [galaxy-dev] galaxy with torque

2014-12-05 Thread Nate Coraor
On Fri, Dec 5, 2014 at 1:25 PM, Fernandez Edgar < edgar.fernan...@umontreal.ca> wrote: > Hello again Nate, > > > > I’ve uninstalled and reinstalled a fresh package of galaxy and torque. > > I’ve also configure, make and install pbs_drmaa. > > > > Finally, when I start galaxy, the main works but t